BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0266400 Os04g0266400|AK068202
(313 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0266400 Similar to AHM2 (Fragment) 531 e-151
Os04g0193200 271 6e-73
Os04g0193900 254 8e-68
Os04g0192400 242 2e-64
Os04g0274125 169 2e-42
Os04g0192100 105 5e-23
>Os04g0266400 Similar to AHM2 (Fragment)
Length = 313
Score = 531 bits (1367), Expect = e-151, Method: Compositional matrix adjust.
Identities = 259/313 (82%), Positives = 259/313 (82%)
Query: 1 MSTPAGVXXXXXXXXXXXXXXXGAGQXXXXXXXXXXXXXXXXXGCAREVDNSPPPVVILD 60
MSTPAGV GAGQ GCAREVDNSPPPVVILD
Sbjct: 1 MSTPAGVAPRRSSRLASSAPPLGAGQPSSSPLPRRRRRRASPSGCAREVDNSPPPVVILD 60
Query: 61 DNEMEQHVEAEEMKKQGXXXXXXXXXXXXXXXXXXXXXXPDWLPDGWIMEVRCGDNGNIY 120
DNEMEQHVEAEEMKKQG PDWLPDGWIMEVRCGDNGNIY
Sbjct: 61 DNEMEQHVEAEEMKKQGEESVEANEAEEKDKDAEVLEELPDWLPDGWIMEVRCGDNGNIY 120
Query: 121 RYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNELHRMHTWLPDGWAIEVRAG 180
RYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNELHRMHTWLPDGWAIEVRAG
Sbjct: 121 RYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNELHRMHTWLPDGWAIEVRAG 180
Query: 181 GKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNILAMVEFNP 240
GKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNILAMVEFNP
Sbjct: 181 GKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNILAMVEFNP 240
Query: 241 DGLPEGWVKEIIFRKCNDGIRKDPYYTDPVSRHVFRTLKSVINYLETGQITKHAYIPRRS 300
DGLPEGWVKEIIFRKCNDGIRKDPYYTDPVSRHVFRTLKSVINYLETGQITKHAYIPRRS
Sbjct: 241 DGLPEGWVKEIIFRKCNDGIRKDPYYTDPVSRHVFRTLKSVINYLETGQITKHAYIPRRS 300
Query: 301 VTDMYSFDSLKVC 313
VTDMYSFDSLKVC
Sbjct: 301 VTDMYSFDSLKVC 313
>Os04g0193200
Length = 347
Score = 271 bits (692), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/258 (51%), Positives = 172/258 (66%), Gaps = 13/258 (5%)
Query: 54 PPVVILDDNEMEQHVEAEEMKKQGXXXXXXXXXXXXXXXXXXXXXXPDWLPDGWIMEVRC 113
P ILDDN+ ++ +EE K P WLPDGWIMEV
Sbjct: 5 PSFGILDDNDCDEVESSEEATKN------------LQSDDDDVDDRPGWLPDGWIMEVYR 52
Query: 114 GDNGNIYRYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNELHRMHTWLPDGW 173
GDNG IY+YY PVSG TF+ K E LHYLFSEMD+R +ES+ CA L R H WLP GW
Sbjct: 53 GDNGTIYQYYICPVSGSTFTMKSEVLHYLFSEMDQRFMESKNCAVGCNLMRTHEWLPKGW 112
Query: 174 AIEVRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNIL 233
+E+RAGG M+KMYKFYV+ P +R SK++VLLY E KIS D G C+TS+++NIL
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGFDTDGQCNTSTQENIL 172
Query: 234 AMVEFNPDGLPEGWVKEIIFRKCND-GIRKDPYYTDPVSRHVFRTLKSVINYLETGQITK 292
A++EFNP GLP+GWVKE++FRK N GIR+D +YTDP+ +VFRT++S Y+ETG++T
Sbjct: 173 AILEFNPKGLPQGWVKEVVFRKTNTGGIRRDRHYTDPIKNYVFRTMRSAALYVETGKVTI 232
Query: 293 HAYIPRRSVTDMYSFDSL 310
A++ + SV ++YSF+
Sbjct: 233 RAFVQKTSVHEVYSFEKF 250
>Os04g0193900
Length = 378
Score = 254 bits (648), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 118/209 (56%), Positives = 155/209 (74%), Gaps = 1/209 (0%)
Query: 103 LPDGWIMEVRCGDNGNIYRYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNEL 162
LPDGWIMEV GD+G IYRYY PVSG TF+ K E LHYLFSEMD+ ES+ A + L
Sbjct: 9 LPDGWIMEVYLGDDGTIYRYYICPVSGRTFTMKSEVLHYLFSEMDQCFTESKNRAVGSNL 68
Query: 163 HRMHTWLPDGWAIEVRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKG 222
R H WLP GW +E+RAGG M+KMYKFYV+ P +R SK++VLLY E KIS D G
Sbjct: 69 TRTHEWLPKGWLVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGFDTDG 128
Query: 223 LCDTSSEDNILAMVEFNPDGLPEGWVKEIIFRKCNDG-IRKDPYYTDPVSRHVFRTLKSV 281
C+TS+++NILA++EFNP+GLP+GWVKE++FRK + G IR+D +YTDP+ +VFRT +S
Sbjct: 129 QCNTSTQENILAILEFNPEGLPQGWVKEVVFRKTHTGRIRRDRHYTDPIKSYVFRTKRSA 188
Query: 282 INYLETGQITKHAYIPRRSVTDMYSFDSL 310
Y+ETG++T A++ + SV ++YSF+
Sbjct: 189 AFYVETGKVTIRAFVQKTSVHEVYSFEKF 217
>Os04g0192400
Length = 637
Score = 242 bits (618), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/247 (49%), Positives = 161/247 (65%), Gaps = 16/247 (6%)
Query: 54 PPVVILDDNEMEQHVEAEEMKKQGXXXXXXXXXXXXXXXXXXXXXXPDWLPDGWIMEVRC 113
P V ILDD++ ++ +EE K P WLPDGWIMEV C
Sbjct: 5 PSVGILDDDDRDEVKSSEEATKN------------LQSDDDDVDGRPGWLPDGWIMEVYC 52
Query: 114 GDNGNIYRYYTSPVSGYTFSTKMETLHYLFSEMDERVLESQACADDNELHRMHTWLPDGW 173
D+G IYRYY P+SG TF+TK E L YLFSEMD+ LES+ A + L R H WLP GW
Sbjct: 53 DDDGTIYRYYICPLSGTTFTTKSEVLDYLFSEMDQCFLESKNHAVGSNLTRTHEWLPKGW 112
Query: 174 AIEVRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNIL 233
+E+RAGG M+KMYKFYV+ P +R SK++VL+Y E KIS D G C+T++++NIL
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGFDTDGQCNTNTQENIL 172
Query: 234 AMVEFNPDGLPEGWVKEIIFRKCNDG-IRKDPYYTDPVSRHVFRTLKSVINYLETGQITK 292
A++EFNP+GLP+GWVKE++FRK N G IR+D +YTDP+ +VF T +S Y+ETG K
Sbjct: 173 AILEFNPEGLPQGWVKEVVFRKTNTGKIRRDRHYTDPIKNYVFHTKRSAALYVETG---K 229
Query: 293 HAYIPRR 299
H + +R
Sbjct: 230 HESLWKR 236
>Os04g0274125
Length = 303
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/142 (56%), Positives = 104/142 (73%), Gaps = 3/142 (2%)
Query: 168 WLPDGWAIEVRAGGKKMEKMYKFYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTS 227
WLPDGW +EV G +Y+FYV+ P G+R SKE+VLLY N+ +I+ D G CDT
Sbjct: 44 WLPDGWIMEVYQGDDGT--IYRFYVYPPAGVRLFSKEDVLLYINKSEITGFDTNGECDTR 101
Query: 228 SEDNILAMVEFNPDGLPEGWVKEIIFRKCNDG-IRKDPYYTDPVSRHVFRTLKSVINYLE 286
++DNILA VEFNP LPEGWVKE++FRK G IRKDPY+TDPV+ + FRT KS + Y++
Sbjct: 102 TKDNILANVEFNPHSLPEGWVKEVVFRKTKTGVIRKDPYFTDPVNNYSFRTRKSAMLYVQ 161
Query: 287 TGQITKHAYIPRRSVTDMYSFD 308
TG++ K A+I R SV D+YSF+
Sbjct: 162 TGKVPKRAFIQRTSVHDLYSFE 183
>Os04g0192100
Length = 225
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 16/122 (13%)
Query: 190 FYVHLPTGMRFLSKENVLLYSNEGKISRCDVKGLCDTSSEDNILAMVEFNPDGLPEGWVK 249
FYV+ P +R SK++VLLY E KIS D G C+T LP+GWVK
Sbjct: 29 FYVYPPDRVRLFSKDDVLLYIKEMKISEFDTDGQCNTR---------------LPQGWVK 73
Query: 250 EIIFRKCNDG-IRKDPYYTDPVSRHVFRTLKSVINYLETGQITKHAYIPRRSVTDMYSFD 308
E++FRK N IR+D +YTDP+ +VFRT++S YLETG++ A++ + SV ++YSF+
Sbjct: 74 EVVFRKTNTSRIRRDQHYTDPIKNYVFRTMRSAALYLETGKVIIRAFVQKTSVHEVYSFE 133
Query: 309 SL 310
Sbjct: 134 KF 135
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,887,493
Number of extensions: 369655
Number of successful extensions: 780
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 749
Number of HSP's successfully gapped: 6
Length of query: 313
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 212
Effective length of database: 11,762,187
Effective search space: 2493583644
Effective search space used: 2493583644
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)