Os04g0224900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : FAD dependent oxidoreductase family protein.
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Os04g0224900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : FAD dependent oxidoreductase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.22 | 0.29 | 10.8 | -0.525 | 1.22 | -0.0757 | 0.061 | -4.32 | -0.129 | 13 | 30.02 | 4966 | -- | -- |
| 41.48 | 0.3 | 10.8 | -1.2 | 1.16 | -0.469 | 0.191 | -- | -0.0817 | 12.9 | 30.3 | 4760 | -- | -- |
| 38.24 | 0.288 | 10.8 | -0.523 | 1.22 | -0.0749 | -- | -4.32 | -0.129 | 13 | 30.03 | 4968 | -- | -- |
| 40.04 | 0.295 | 10.9 | -1.35 | 1.18 | -0.52 | -- | -- | -0.144 | 12.9 | 31.4 | 4745 | -- | -- |
| 113.87 | 0.5 | 10.9 | -1.3 | -- | -0.702 | -- | -0.0876 | -0.278 | -- | 29.6 | 4804 | -- | -- |
| 53.41 | 0.343 | 10.9 | -1.16 | 1.18 | -- | -0.0322 | -- | -0.248 | 13 | -- | -- | -- | -- |
| 53.42 | 0.342 | 10.9 | -1.16 | 1.18 | -- | -- | -- | -0.248 | 13 | -- | -- | -- | -- |
| 113.88 | 0.499 | 10.9 | -1.31 | -- | -0.707 | -- | -- | -0.28 | -- | 29.6 | 4804 | -- | -- |
| 83.25 | 0.425 | 10.8 | -- | 1.22 | -0.35 | -- | -- | -0.0413 | 12.9 | 31.1 | 4824 | -- | -- |
| 139.7 | 0.552 | 10.9 | -1.21 | -- | -- | -- | -- | -0.271 | -- | -- | -- | -- | -- |
| 89.01 | 0.441 | 10.9 | -- | 1.2 | -- | -- | -- | -0.118 | 13.1 | -- | -- | -- | -- |
| 158.57 | 0.588 | 10.9 | -- | -- | -0.612 | -- | -- | -0.135 | -- | 29.6 | 4804 | -- | -- |
| 178.09 | 0.623 | 10.9 | -- | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.66 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 37.66 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 16 | 37.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 5 | 7 |
| 17 | 37.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 26 | 37.75 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 14 |
| 89 | 38.08 | temperature | 30 | 1440 | > th | dose independent | sin | 8 | NA |
| 90 | 38.08 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 101 | 38.18 | temperature | 30 | 1440 | < th | dose independent | sin | 8 | NA |
| 143 | 38.39 | temperature | 30 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 148 | 38.48 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 162 | 38.49 | temperature | 30 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 171 | 38.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 172 | 38.54 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 4 |
| 197 | 38.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 266 | 38.77 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 461 | 38.98 | temperature | 30 | 4320 | > th | dose dependent | rect. | 16 | 23 |
| 483 | 38.99 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 490 | 39.00 | temperature | 30 | 4320 | > th | dose dependent | rect. | 10 | 9 |
| 542 | 39.01 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 18 |
| 546 | 39.01 | temperature | 30 | 4320 | > th | dose dependent | sin | 20 | NA |
| 547 | 39.01 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |
| 548 | 39.01 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 550 | 39.01 | temperature | 30 | 4320 | > th | dose dependent | rect. | 12 | 7 |
| 554 | 39.01 | temperature | 30 | 4320 | > th | dose dependent | rect. | 8 | 11 |
| 660 | 39.02 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 745 | 39.02 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 23 |
| 747 | 39.02 | temperature | 30 | 4320 | > th | dose dependent | sin | 18 | NA |
| 789 | 39.03 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 11 |
| 792 | 39.03 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 13 |
| 840 | 39.04 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |