BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0224900 Os04g0224900|AK058569
         (378 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0224900  FAD dependent oxidoreductase family protein         787   0.0  
AK109972                                                          337   1e-92

>Os04g0224900 FAD dependent oxidoreductase family protein
          Length = 378

 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/378 (100%), Positives = 378/378 (100%)

Query: 1   YAEVVSLIKDESGERIIGARIRDTLSGKEFDAFAKVVVNAAGPFCDSVRKMANNDVVPMI 60
           YAEVVSLIKDESGERIIGARIRDTLSGKEFDAFAKVVVNAAGPFCDSVRKMANNDVVPMI
Sbjct: 1   YAEVVSLIKDESGERIIGARIRDTLSGKEFDAFAKVVVNAAGPFCDSVRKMANNDVVPMI 60

Query: 61  SPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTAITMLPEPHE 120
           SPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTAITMLPEPHE
Sbjct: 61  SPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTAITMLPEPHE 120

Query: 121 DEIQFILDAICDYLNVQVRRSDVLSAWSGIRPLAMDPSAKNTESISRDHVVFEDYPGLIT 180
           DEIQFILDAICDYLNVQVRRSDVLSAWSGIRPLAMDPSAKNTESISRDHVVFEDYPGLIT
Sbjct: 121 DEIQFILDAICDYLNVQVRRSDVLSAWSGIRPLAMDPSAKNTESISRDHVVFEDYPGLIT 180

Query: 181 ITGGKWTTYRSMAEDAVNAAIRSGNLKPANGCVTDHLHILGGYGWDPASFTVLAQNYKRM 240
           ITGGKWTTYRSMAEDAVNAAIRSGNLKPANGCVTDHLHILGGYGWDPASFTVLAQNYKRM
Sbjct: 181 ITGGKWTTYRSMAEDAVNAAIRSGNLKPANGCVTDHLHILGGYGWDPASFTVLAQNYKRM 240

Query: 241 KRTYGGKIIPGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCA 300
           KRTYGGKIIPGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCA
Sbjct: 241 KRTYGGKIIPGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCA 300

Query: 301 RHEYCESAVDFIARRCRLAFLDTDAAGRALPRIIEILALERKWDKARQKLELQKGKDFLE 360
           RHEYCESAVDFIARRCRLAFLDTDAAGRALPRIIEILALERKWDKARQKLELQKGKDFLE
Sbjct: 301 RHEYCESAVDFIARRCRLAFLDTDAAGRALPRIIEILALERKWDKARQKLELQKGKDFLE 360

Query: 361 TFKSSKNAQFRDGKHNGQ 378
           TFKSSKNAQFRDGKHNGQ
Sbjct: 361 TFKSSKNAQFRDGKHNGQ 378



>AK109972 
          Length = 859

 Score =  337 bits (864), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 167/372 (44%), Positives = 237/372 (63%), Gaps = 24/372 (6%)

Query: 1   YAEVVSLIK---DESGERIIGARIRDTLSGKEFDAFAKVVVNAAGPFCDSVRKMANNDVV 57
           + EVV++ K   +   ++I GAR+RD L+G E+D   K ++NA GPF D++RK+      
Sbjct: 322 HTEVVAIHKKPVEGKADQICGARVRDMLTGDEWDVKCKCLINATGPFSDTLRKLDAPTAQ 381

Query: 58  PMISPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTAITMLPE 117
            +++ SSGVHI LP Y+SP  MGLI P+T DGRV+F LPW G T+AGTTD++  +   P 
Sbjct: 382 EIVAASSGVHITLPGYFSPRDMGLIDPQTSDGRVIFFLPWQGNTIAGTTDTAAPVEAHPR 441

Query: 118 PHEDEIQFILDAICDYL--NVQVRRSDVLSAWSGIRPLAMDPSAKNTESISRDHVVFEDY 175
           P E+EIQ+ILD + +YL  +++VRR DVLSAWSG+RPL  DP+A +T+S+ R+H++    
Sbjct: 442 PKEEEIQWILDEVRNYLSPDIKVRRGDVLSAWSGLRPLVKDPAATDTQSLVRNHMINASE 501

Query: 176 PGLITITGGKWTTYRSMAEDAVNAAIRSGNLKPANGCVTDHLHILGGYGWDPASFTVLAQ 235
            GL+TI GGKWTTYR MAE  V+ AI    LKP  GCVT +  +LG +GW    +  L Q
Sbjct: 502 SGLLTIAGGKWTTYREMAEQTVDRAIEEFKLKPQRGCVTKNTRLLGSHGWTKTMYVKLLQ 561

Query: 236 NYKRMKRTYGGKIIPGAMDSAVSKHLSHAYGTLATQVASIAQNEGL-----GKRLAHGYP 290
            +               +++ V++HLS+ YG  A  V SIA+  G      GKR+   YP
Sbjct: 562 RF--------------GLETDVARHLSNTYGDRAWSVCSIAEPTGQRWPVHGKRIDQLYP 607

Query: 291 FLEAEVAYCARHEYCESAVDFIARRCRLAFLDTDAAGRALPRIIEILALERKWDKARQKL 350
           ++EAE+ Y  R EY  +A DFIARR RL+FL+ +A   ALPR+I+++  E  WD+ R+K 
Sbjct: 608 YIEAEIRYACRSEYAATAQDFIARRTRLSFLNAEATVDALPRVIDVMGEELGWDEKRKKQ 667

Query: 351 ELQKGKDFLETF 362
           E  +  DF+ + 
Sbjct: 668 EWAESVDFMASM 679



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,337,610
Number of extensions: 571788
Number of successful extensions: 1159
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)