BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0224900 Os04g0224900|AK058569
         (378 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G10370.1  | chr3:3216502-3219027 FORWARD LENGTH=630            658   0.0  

>AT3G10370.1 | chr3:3216502-3219027 FORWARD LENGTH=630
          Length = 629

 Score =  658 bits (1697), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 303/376 (80%), Positives = 345/376 (91%)

Query: 1   YAEVVSLIKDESGERIIGARIRDTLSGKEFDAFAKVVVNAAGPFCDSVRKMANNDVVPMI 60
           +AEVVSLI D++ +RIIGARIR+ L+G+EF+++AKVVVNAAGPFCDS+RKM + D  PMI
Sbjct: 254 HAEVVSLITDDATKRIIGARIRNNLTGQEFNSYAKVVVNAAGPFCDSIRKMIDEDTKPMI 313

Query: 61  SPSSGVHIVLPDYYSPDGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSSTAITMLPEPHE 120
            PSSGVHIVLPDYYSP+GMGLIVPKTKDGRVVFMLPWLGRTVAGTTDS+T+IT LPEPHE
Sbjct: 314 CPSSGVHIVLPDYYSPEGMGLIVPKTKDGRVVFMLPWLGRTVAGTTDSNTSITSLPEPHE 373

Query: 121 DEIQFILDAICDYLNVQVRRSDVLSAWSGIRPLAMDPSAKNTESISRDHVVFEDYPGLIT 180
           DEIQFILDAI DYLN++VRR+DVLSAWSGIRPLAMDP+AK+TESISRDHVVFE+ PGL+T
Sbjct: 374 DEIQFILDAISDYLNIKVRRTDVLSAWSGIRPLAMDPTAKSTESISRDHVVFEENPGLVT 433

Query: 181 ITGGKWTTYRSMAEDAVNAAIRSGNLKPANGCVTDHLHILGGYGWDPASFTVLAQNYKRM 240
           ITGGKWTTYRSMAEDAV+AAI+SG LKP N CVT  L +LG YGW+P+SFT LAQ Y RM
Sbjct: 434 ITGGKWTTYRSMAEDAVDAAIKSGQLKPTNECVTQKLQLLGSYGWEPSSFTTLAQQYVRM 493

Query: 241 KRTYGGKIIPGAMDSAVSKHLSHAYGTLATQVASIAQNEGLGKRLAHGYPFLEAEVAYCA 300
           K+TYGGK++PGAMD+A +KHLSHAYG++A +VA+IAQ EGLGKRLAHG+PFLEAEVAYCA
Sbjct: 494 KKTYGGKVVPGAMDTAAAKHLSHAYGSMADRVATIAQEEGLGKRLAHGHPFLEAEVAYCA 553

Query: 301 RHEYCESAVDFIARRCRLAFLDTDAAGRALPRIIEILALERKWDKARQKLELQKGKDFLE 360
           RHEYCESAVDFIARRCR+AFLDTDAA RAL R++EILA E KWDK+RQK ELQK K+FLE
Sbjct: 554 RHEYCESAVDFIARRCRIAFLDTDAAARALQRVVEILASEHKWDKSRQKQELQKAKEFLE 613

Query: 361 TFKSSKNAQFRDGKHN 376
           TFKSSKNAQF DGKHN
Sbjct: 614 TFKSSKNAQFNDGKHN 629



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,425,893
Number of extensions: 352941
Number of successful extensions: 758
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 758
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)