Os04g0221600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, FYVE/PHD-type domain containing protein.
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Os04g0221600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, FYVE/PHD-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.19 | 0.216 | 11.5 | 0.418 | 0.153 | 0.281 | -0.0229 | -0.64 | 0.206 | 8.87 | 90.38 | 216 | -- | -- |
| 21.91 | 0.218 | 11.5 | 0.402 | 0.155 | 0.235 | -0.0745 | -- | 0.199 | 8.74 | 90 | 215 | -- | -- |
| 21.19 | 0.214 | 11.5 | 0.416 | 0.155 | 0.286 | -- | -0.676 | 0.206 | 8.79 | 90.81 | 215 | -- | -- |
| 21.93 | 0.218 | 11.5 | 0.397 | 0.154 | 0.243 | -- | -- | 0.197 | 8.99 | 90 | 218 | -- | -- |
| 22.3 | 0.22 | 11.5 | 0.413 | -- | 0.342 | -- | -0.614 | 0.214 | -- | 90 | 280 | -- | -- |
| 23.07 | 0.225 | 11.5 | 0.426 | 0.225 | -- | -0.121 | -- | 0.157 | 7.18 | -- | -- | -- | -- |
| 23.11 | 0.225 | 11.5 | 0.423 | 0.224 | -- | -- | -- | 0.157 | 7.25 | -- | -- | -- | -- |
| 22.98 | 0.223 | 11.5 | 0.384 | -- | 0.305 | -- | -- | 0.204 | -- | 87.84 | 377 | -- | -- |
| 26.02 | 0.238 | 11.5 | -- | 0.132 | 0.31 | -- | -- | 0.164 | 9.46 | 89.52 | 266 | -- | -- |
| 25.77 | 0.237 | 11.5 | 0.427 | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
| 27.83 | 0.247 | 11.5 | -- | 0.229 | -- | -- | -- | 0.11 | 7.13 | -- | -- | -- | -- |
| 26.82 | 0.241 | 11.5 | -- | -- | 0.337 | -- | -- | 0.167 | -- | 86.46 | 387 | -- | -- |
| 30.59 | 0.258 | 11.6 | -- | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.81 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 10 |
| 4 | 18.87 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 13 |
| 8 | 18.90 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 13 |
| 14 | 18.97 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 23 | 19.08 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 11 |
| 39 | 19.19 | temperature | 25 | 720 | < th | dose independent | sin | 13 | NA |
| 50 | 19.25 | temperature | 25 | 720 | > th | dose independent | sin | 13 | NA |
| 56 | 19.26 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 106 | 19.50 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 9 |
| 120 | 19.55 | temperature | 25 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 124 | 19.57 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 152 | 19.67 | temperature | 25 | 720 | > th | dose dependent | sin | 12 | NA |
| 387 | 20.29 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 462 | 20.47 | temperature | 25 | 720 | > th | dose independent | rect. | 24 | 3 |
| 489 | 20.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 545 | 20.58 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 553 | 20.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 1 |
| 566 | 20.60 | temperature | 20 | 90 | > th | dose dependent | sin | 10 | NA |
| 670 | 20.71 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 4 |
| 698 | 20.74 | temperature | 25 | 1440 | > th | dose independent | rect. | 24 | 8 |
| 759 | 20.79 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 839 | 20.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 850 | 20.88 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 979 | 20.98 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 1 |
| 987 | 20.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 1 |