BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0221600 Os04g0221600|AK100967
(974 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32810.2 | chr1:11881810-11885843 FORWARD LENGTH=1069 170 4e-42
AT4G10600.1 | chr4:6547934-6548647 REVERSE LENGTH=238 140 3e-33
AT2G01810.1 | chr2:347537-349952 FORWARD LENGTH=698 55 1e-07
AT1G33420.1 | chr1:12121063-12123346 REVERSE LENGTH=698 54 4e-07
AT5G22260.1 | chr5:7367707-7370192 REVERSE LENGTH=673 53 1e-06
AT1G66170.1 | chr1:24638793-24641222 REVERSE LENGTH=705 52 2e-06
>AT1G32810.2 | chr1:11881810-11885843 FORWARD LENGTH=1069
Length = 1068
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 79/175 (45%), Positives = 103/175 (58%), Gaps = 19/175 (10%)
Query: 32 DDWGDGSWTVDCSCGITYDDGEEMVSCDECNVWVHTRCARYVRGVHISFSCHNCKAKRAP 91
+DW DG WTVDC CG+ DDG EMV CD+C VWVHTRC+R+V G + F+CH CK+K
Sbjct: 15 EDWVDGLWTVDCVCGVNDDDGTEMVKCDDCGVWVHTRCSRFVEGQEL-FTCHKCKSKNNV 73
Query: 92 SSXXXXXXXXXXXXXPTH---------RPRPL---YRRWAEVPLPSRVHVHGLPGGTDTA 139
+ PT R P +R W E+P +VHV G+PGG D +
Sbjct: 74 NDSEETEVAQLLVELPTKTLGMENSCTRSVPFKRPFRLWTEIPAEEKVHVQGIPGG-DPS 132
Query: 140 LFRSAAPSPVFSSALWRCAGYVPKRFGFRYCEFPYWAD---DKDGANALFALARE 191
LF S VFS LW+C+GYVPK+F +Y EFP W + D+DGA LF++++E
Sbjct: 133 LFDGL--SSVFSRELWKCSGYVPKKFNLKYREFPCWDEQEKDEDGAGVLFSMSKE 185
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/268 (35%), Positives = 130/268 (48%), Gaps = 41/268 (15%)
Query: 634 QDTSNSSASAELQSTETTA-SLSDEQLALLLHQQLNSSPRVPRVPRCHQASTMQMLHPTG 692
Q SS +QS + A +LSDE+LAL LH QLNSSPRVPRVPR Q ++ L PT
Sbjct: 694 QSIFQSSTKNPVQSIISLAPNLSDEELALRLHHQLNSSPRVPRVPRMRQPGSLP-LSPTA 752
Query: 693 ASVFSKRSSAHGGRDQALVLKKRNKDDA------WRDND--ETKKTGKVSSVERRHRDSS 744
S KR+S+ G +D +++NKD + RD+D T+ S +RR + S
Sbjct: 753 PSF--KRTSSSGSKDHTTFSRRKNKDTSKEGYCNLRDDDRCSTRSAKNRRSPDRRTQQDS 810
Query: 745 TER--VLAAKDSCKFTENIESEQRNRGICSTGA-----------------------TSGV 779
R L +K T S + + + +S
Sbjct: 811 GSRGGSLCSKGEENETTKTSSYSSRKVLLPPNSTTSTSSGPCSSSELNEHNKPSPHSSPR 870
Query: 780 GNDAPIDRGVSHDLPGLIEEIISKNTNITYGELCNAIRQHWGDLSKPNVENNAYPNYLHA 839
N P+ R LPGLI EI++K + Y ELCNA+ HW L K N E AY ++ A
Sbjct: 871 NNGTPVHR----TLPGLINEIMNKGKRMAYEELCNAVLPHWPHLRKHNGERYAYSSHSQA 926
Query: 840 VNDCLRNRNDWAHLVDQAAMMNPNKRRK 867
V DCLRNR++WA LVD+ N K+++
Sbjct: 927 VLDCLRNRHEWARLVDRGPKTNSGKKKR 954
>AT4G10600.1 | chr4:6547934-6548647 REVERSE LENGTH=238
Length = 237
Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/175 (41%), Positives = 95/175 (54%), Gaps = 19/175 (10%)
Query: 32 DDWGDGSWTVDCSCGITYDDGEEMVSCDECNVWVHTRCARYVRGVHISFSCHNCKAKRAP 91
+DW SWTVDC CG+ +DDG+EMV CDEC VWVHT C+RYV+G + F CH CK K
Sbjct: 5 EDWVYESWTVDCVCGVNFDDGKEMVDCDECGVWVHTWCSRYVKGDDL-FVCHKCKIKNNE 63
Query: 92 ---SSXXXXXXXXXXXXXPTHRPRPLYRRWAEVPLPSRVHVHGLPGGTDTALFRSAAPSP 148
S + + +E+P+ RVHV G+PGG D LF S
Sbjct: 64 DELSKLSVTKSLRMENLCTQSSESVVLKACSEIPIEERVHVQGVPGG-DLGLFECV--SS 120
Query: 149 VFSSALWRCAGYVPKRFGFRYCEFPYW------------ADDKDGANALFALARE 191
VFS LW+C+GYVPK+F F+ EFP W DD + A L ++++E
Sbjct: 121 VFSRQLWKCSGYVPKKFRFQCREFPCWDEKENVCDVVGDEDDSNLAGVLLSMSKE 175
>AT2G01810.1 | chr2:347537-349952 FORWARD LENGTH=698
Length = 697
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/35 (62%), Positives = 23/35 (65%)
Query: 35 GDGSWTVDCSCGITYDDGEEMVSCDECNVWVHTRC 69
G WTVDC CG DDGE MV+CD C VW HT C
Sbjct: 630 GFDDWTVDCKCGARDDDGERMVACDACKVWHHTLC 664
>AT1G33420.1 | chr1:12121063-12123346 REVERSE LENGTH=698
Length = 697
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 24/35 (68%)
Query: 35 GDGSWTVDCSCGITYDDGEEMVSCDECNVWVHTRC 69
G +W VDC CG DDGE M++CD C VW HTRC
Sbjct: 598 GVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRC 632
>AT5G22260.1 | chr5:7367707-7370192 REVERSE LENGTH=673
Length = 672
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 41 VDCSCGITYDDGEEMVSCDECNVWVHTRC--ARYVRGVHISFSCHNCKAKRAPSS 93
++C CG T +DGE MV CD C VW HTRC ++ V F C +C P S
Sbjct: 615 IECECGATEEDGERMVCCDICEVWQHTRCVGVQHNEEVPRIFLCQSCDQHLIPLS 669
>AT1G66170.1 | chr1:24638793-24641222 REVERSE LENGTH=705
Length = 704
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 35 GDGSWTVDCSCGITYDDGEEMVSCDECNVWVHTRCARYVRGVHIS------FSCHNCKAK 88
G +W V C C DDGE M+SCD C VW HTRC G+ S F C NC +
Sbjct: 601 GCDTWMVKCICRARDDDGERMISCDVCEVWQHTRCC----GIDDSDTLPPLFVCSNCCEE 656
Query: 89 RA 90
A
Sbjct: 657 FA 658
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.312 0.127 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 20,209,657
Number of extensions: 860480
Number of successful extensions: 2648
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 2643
Number of HSP's successfully gapped: 8
Length of query: 974
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 866
Effective length of database: 8,145,641
Effective search space: 7054125106
Effective search space used: 7054125106
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 117 (49.7 bits)