BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0221600 Os04g0221600|AK100967
         (974 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0221600  Zinc finger, FYVE/PHD-type domain containing p...  1815   0.0  

>Os04g0221600 Zinc finger, FYVE/PHD-type domain containing protein
          Length = 974

 Score = 1815 bits (4700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 896/974 (91%), Positives = 896/974 (91%)

Query: 1   MKGGRLHRLERXXXXXXXXXXXXXXXXXXXXDDWGDGSWTVDCSCGITYDDGEEMVSCDE 60
           MKGGRLHRLER                    DDWGDGSWTVDCSCGITYDDGEEMVSCDE
Sbjct: 1   MKGGRLHRLERPPAAHITTAAAATTPAPAPADDWGDGSWTVDCSCGITYDDGEEMVSCDE 60

Query: 61  CNVWVHTRCARYVRGVHISFSCHNCKAKRAPSSXXXXXXXXXXXXXPTHRPRPLYRRWAE 120
           CNVWVHTRCARYVRGVHISFSCHNCKAKRAPSS             PTHRPRPLYRRWAE
Sbjct: 61  CNVWVHTRCARYVRGVHISFSCHNCKAKRAPSSADEAEVAELLAELPTHRPRPLYRRWAE 120

Query: 121 VPLPSRVHVHGLPGGTDTALFRSAAPSPVFSSALWRCAGYVPKRFGFRYCEFPYWADDKD 180
           VPLPSRVHVHGLPGGTDTALFRSAAPSPVFSSALWRCAGYVPKRFGFRYCEFPYWADDKD
Sbjct: 121 VPLPSRVHVHGLPGGTDTALFRSAAPSPVFSSALWRCAGYVPKRFGFRYCEFPYWADDKD 180

Query: 181 GANALFALAREKRKEKAETRFPLRLGAIHKDKNYVRTLSICGDKVDGVEHSVDDDAKRTS 240
           GANALFALAREKRKEKAETRFPLRLGAIHKDKNYVRTLSICGDKVDGVEHSVDDDAKRTS
Sbjct: 181 GANALFALAREKRKEKAETRFPLRLGAIHKDKNYVRTLSICGDKVDGVEHSVDDDAKRTS 240

Query: 241 PPSDAKKRGTSISIVEPDTWDNGCEKKRDFDVPASEDQHAKTNMVNSDLHVLVXXXXXXX 300
           PPSDAKKRGTSISIVEPDTWDNGCEKKRDFDVPASEDQHAKTNMVNSDLHVLV       
Sbjct: 241 PPSDAKKRGTSISIVEPDTWDNGCEKKRDFDVPASEDQHAKTNMVNSDLHVLVEAKKKRA 300

Query: 301 XXXXXXGDKKCSASKEITGMLKKYEPKESKRLVISSGXXXXXXXXEQEVHSRFVKGSVYE 360
                 GDKKCSASKEITGMLKKYEPKESKRLVISSG        EQEVHSRFVKGSVYE
Sbjct: 301 SSSERSGDKKCSASKEITGMLKKYEPKESKRLVISSGVATTAAVAEQEVHSRFVKGSVYE 360

Query: 361 GLDGNQNVGLQTGVRSNGVVKRDDAKRSNGDVQSDAAPEKMNEGLDLQKQSNQTSNLLVV 420
           GLDGNQNVGLQTGVRSNGVVKRDDAKRSNGDVQSDAAPEKMNEGLDLQKQSNQTSNLLVV
Sbjct: 361 GLDGNQNVGLQTGVRSNGVVKRDDAKRSNGDVQSDAAPEKMNEGLDLQKQSNQTSNLLVV 420

Query: 421 GGVPDLQTNQSESLTIKKEASTDDHERTEAIQFVSDEHKSGKQDTAMLSTLQRHSSKLAS 480
           GGVPDLQTNQSESLTIKKEASTDDHERTEAIQFVSDEHKSGKQDTAMLSTLQRHSSKLAS
Sbjct: 421 GGVPDLQTNQSESLTIKKEASTDDHERTEAIQFVSDEHKSGKQDTAMLSTLQRHSSKLAS 480

Query: 481 DLVYQHPKSETQNPMHTIPEHPNSSLEPSSEETTVRLVKKDQTRLVSSADSENDFAKKSE 540
           DLVYQHPKSETQNPMHTIPEHPNSSLEPSSEETTVRLVKKDQTRLVSSADSENDFAKKSE
Sbjct: 481 DLVYQHPKSETQNPMHTIPEHPNSSLEPSSEETTVRLVKKDQTRLVSSADSENDFAKKSE 540

Query: 541 SSQDRTRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGNAPPGSL 600
           SSQDRTRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGNAPPGSL
Sbjct: 541 SSQDRTRSSDKVQLKGFVPSAPKSSQGSRTYVSSAKNRFIVPKEQLQKTSTEGNAPPGSL 600

Query: 601 QGEVAPLHSRNKAMPLSFYQRKDKIHHRSIHITQDTSNSSASAELQSTETTASLSDEQLA 660
           QGEVAPLHSRNKAMPLSFYQRKDKIHHRSIHITQDTSNSSASAELQSTETTASLSDEQLA
Sbjct: 601 QGEVAPLHSRNKAMPLSFYQRKDKIHHRSIHITQDTSNSSASAELQSTETTASLSDEQLA 660

Query: 661 LLLHQQLNSSPRVPRVPRCHQASTMQMLHPTGASVFSKRSSAHGGRDQALVLKKRNKDDA 720
           LLLHQQLNSSPRVPRVPRCHQASTMQMLHPTGASVFSKRSSAHGGRDQALVLKKRNKDDA
Sbjct: 661 LLLHQQLNSSPRVPRVPRCHQASTMQMLHPTGASVFSKRSSAHGGRDQALVLKKRNKDDA 720

Query: 721 WRDNDETKKTGKVSSVERRHRDSSTERVLAAKDSCKFTENIESEQRNRGICSTGATSGVG 780
           WRDNDETKKTGKVSSVERRHRDSSTERVLAAKDSCKFTENIESEQRNRGICSTGATSGVG
Sbjct: 721 WRDNDETKKTGKVSSVERRHRDSSTERVLAAKDSCKFTENIESEQRNRGICSTGATSGVG 780

Query: 781 NDAPIDRGVSHDLPGLIEEIISKNTNITYGELCNAIRQHWGDLSKPNVENNAYPNYLHAV 840
           NDAPIDRGVSHDLPGLIEEIISKNTNITYGELCNAIRQHWGDLSKPNVENNAYPNYLHAV
Sbjct: 781 NDAPIDRGVSHDLPGLIEEIISKNTNITYGELCNAIRQHWGDLSKPNVENNAYPNYLHAV 840

Query: 841 NDCLRNRNDWAHLVDQAAMMNPNKRRKVEESDSLSADVLATEKTNKEAKRGPEDTNAESH 900
           NDCLRNRNDWAHLVDQAAMMNPNKRRKVEESDSLSADVLATEKTNKEAKRGPEDTNAESH
Sbjct: 841 NDCLRNRNDWAHLVDQAAMMNPNKRRKVEESDSLSADVLATEKTNKEAKRGPEDTNAESH 900

Query: 901 HEILPRGKRKARKCRRLELKGRRVNDTRKRXXXXXXXXXXXXXXXXXXXXXXXXPMDKSL 960
           HEILPRGKRKARKCRRLELKGRRVNDTRKR                        PMDKSL
Sbjct: 901 HEILPRGKRKARKCRRLELKGRRVNDTRKRSSFDSASDDDDTTLSDSSSDRNDTPMDKSL 960

Query: 961 EDSFVIAKNADSSS 974
           EDSFVIAKNADSSS
Sbjct: 961 EDSFVIAKNADSSS 974



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.127    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 31,667,514
Number of extensions: 1351152
Number of successful extensions: 3140
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3138
Number of HSP's successfully gapped: 1
Length of query: 974
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 864
Effective length of database: 11,292,261
Effective search space: 9756513504
Effective search space used: 9756513504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 161 (66.6 bits)