FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0195100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0341) R2 : 0.281
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.11 (0.0832) R2dE : 0.304 R2E : 0.228
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.361 (0.0742) R2dN8 : 0.0526 R2N8 : -0.0236
σ : 0.634
deviance : 185.29
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 30.7
memory length : 1422
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.82 0.618 4.09 -1.25 0.197 -1.55 0.259 2.79 0.189 16.5 29.97 1428 -- --
173.5 0.613 3.99 -0.688 0.23 -1.26 0.267 -- 0.331 16.5 30.29 1405 -- --
172.97 0.613 4.09 -1.26 0.199 -1.54 -- 2.83 0.189 16.1 29.96 1421 -- --
173.51 0.613 3.99 -0.624 0.226 -1.22 -- -- 0.315 16.2 30.3 1409 -- --
175.06 0.616 4.09 -1.28 -- -1.55 -- 2.96 0.181 -- 29.95 1427 -- --
254.61 0.748 4.05 -0.234 0.113 -- 0.335 -- 0.0502 19.8 -- -- -- --
254.89 0.748 4.05 -0.241 0.119 -- -- -- 0.0513 18.9 -- -- -- --
175.76 0.617 3.99 -0.63 -- -1.22 -- -- 0.296 -- 30.26 1429 -- --
182.8 0.63 3.98 -- 0.218 -1.13 -- -- 0.371 16.2 30.63 1412 -- --
255.63 0.747 4.05 -0.244 -- -- -- -- 0.049 -- -- -- -- --
256.42 0.749 4.05 -- 0.121 -- -- -- 0.0781 18.8 -- -- -- --
185.29 0.634 3.98 -- -- -1.11 -- -- 0.361 -- 30.7 1422 -- --
257.2 0.749 4.04 -- -- -- -- -- 0.0761 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.25 temperature 25.0 1440 > th dose dependent rect. 16 17
3 169.52 temperature 25.0 1440 > th dose dependent rect. 18 1
8 169.92 temperature 20.0 1440 > th dose dependent rect. 16 6
13 170.16 temperature 25.0 1440 > th dose dependent rect. 16 8
40 170.97 wind 5.0 43200 > th dose independent rect. 20 1
47 171.08 wind 5.0 43200 < th dose independent rect. 20 1
56 171.24 temperature 10.0 1440 > th dose dependent rect. 16 5
65 171.39 temperature 25.0 1440 > th dose dependent sin 11 NA
83 171.64 precipitation 0.1 43200 > th dose dependent rect. 20 1
108 172.08 precipitation 0.1 43200 < th dose independent rect. 20 1
109 172.08 precipitation 0.1 43200 < th dose dependent rect. 20 1
112 172.12 precipitation 0.1 43200 > th dose independent rect. 20 1
124 172.32 temperature 20.0 1440 > th dose dependent sin 16 NA
130 172.38 temperature 25.0 1440 > th dose dependent rect. 7 1
145 172.49 temperature 25.0 1440 > th dose dependent rect. 2 7
152 172.55 temperature 25.0 1440 > th dose dependent rect. 3 5
156 172.60 temperature 30.0 1440 < th dose independent rect. 16 21
157 172.61 temperature 30.0 1440 < th dose independent rect. 9 19
160 172.62 temperature 30.0 1440 < th dose independent rect. 9 23
162 172.63 temperature 30.0 1440 < th dose independent rect. 9 10
163 172.63 temperature 30.0 1440 < th dose independent rect. 9 12
166 172.63 temperature 30.0 1440 < th dose independent rect. 9 16
176 172.65 temperature 30.0 1440 < th dose independent rect. 18 19
190 172.71 temperature 30.0 1440 > th dose independent rect. 9 10
210 172.75 temperature 30.0 1440 < th dose independent rect. 18 23
216 172.80 temperature 30.0 1440 < th dose independent rect. 14 23
224 172.86 temperature 30.0 1440 < th dose dependent rect. 18 1
228 172.90 temperature 30.0 1440 > th dose independent rect. 16 22
236 172.94 temperature 30.0 1440 < th dose independent rect. 3 20
237 172.94 temperature 30.0 1440 < th dose independent rect. 7 21
247 172.95 temperature 30.0 1440 < th dose independent rect. 3 16
248 172.95 temperature 30.0 1440 < th dose independent rect. 7 16
264 172.96 temperature 30.0 1440 < th dose independent rect. 7 12
282 172.96 temperature 30.0 1440 < th dose independent rect. 22 21
292 172.96 temperature 30.0 1440 < th dose independent rect. 20 23
293 172.96 temperature 30.0 1440 < th dose independent rect. 22 23
295 172.97 temperature 30.0 1440 < th dose independent no NA NA
313 172.97 temperature 30.0 1440 > th dose independent rect. 18 23
363 173.01 temperature 30.0 1440 < th dose independent sin 22 NA
372 173.05 temperature 30.0 1440 > th dose independent rect. 13 23
383 173.08 temperature 30.0 1440 > th dose independent sin 21 NA
391 173.10 temperature 30.0 1440 > th dose independent no NA NA
518 173.22 temperature 30.0 1440 > th dose independent rect. 9 7
599 173.49 temperature 30.0 1440 < th dose independent rect. 9 4
639 173.56 temperature 25.0 1440 > th dose dependent rect. 2 22
644 173.59 temperature 30.0 1440 > th dose independent rect. 9 5
647 173.59 temperature 25.0 1440 > th dose dependent rect. 6 22
666 173.60 temperature 25.0 1440 > th dose dependent no NA NA
686 173.62 temperature 25.0 1440 > th dose dependent rect. 6 18
798 173.83 temperature 25.0 4320 < th dose independent rect. 7 1
843 174.00 temperature 30.0 1440 > th dose independent rect. 11 2
943 174.27 temperature 30.0 1440 < th dose independent rect. 6 7
944 174.27 temperature 30.0 1440 < th dose independent rect. 2 11
984 174.33 temperature 30.0 1440 < th dose independent rect. 22 15