BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0195100 Os04g0195100|AK107201
         (382 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65850.1  | chr5:26346317-26347495 FORWARD LENGTH=393           64   1e-10
AT1G50870.1  | chr1:18855147-18856337 FORWARD LENGTH=397           55   8e-08

>AT5G65850.1 | chr5:26346317-26347495 FORWARD LENGTH=393
          Length = 392

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 122/298 (40%), Gaps = 43/298 (14%)

Query: 16  LPDELVWEILARLPARGLLRCHAVCRDWRRLATSADF---LLAHHRHQPPRPLVFGCARW 72
           +P +++ EIL RLPA+ +  C  V + W  +    DF    L    H+P   L+F C + 
Sbjct: 35  IPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSLHRP--QLLFCCKK- 91

Query: 73  RSGXXXXXXXXXXXXXLIRHPAERRRVLGFSDYRQHQSFKIHSSCDGLLLF----VSGRA 128
                            +++P E    +   ++     +KI    +GL+ F    ++   
Sbjct: 92  ------DGNLFFFSSPQLQNPYENSSAISLKNF--SLCYKISRPVNGLICFKRKEMNETV 143

Query: 129 FYICNPATRQV--TPVPALTGGGSQVTLYPHPSSGDGEYRVLKWKYPDAVCILAVGSSEK 186
             ICNP+T      P P  T  G        P     +++VL     D   +L +G+ E 
Sbjct: 144 TVICNPSTGHTLSLPKPMKTSIGPSRFFVYEPI--QKQFKVLLSYKSDEHQVLTLGTGEL 201

Query: 187 PRRIGLPEAFLPPVFWIDEIGFLPPVLLHGCLHW---HLRKPEDAILVFDTVAESFRWMV 243
             RI   E  +P +  + EI       ++G L++   +L   +  I+ FD  +E FR++ 
Sbjct: 202 SWRI--IECSMPHILGMSEI------CINGVLYYPAINLSSGDYIIVCFDVRSEKFRFIT 253

Query: 244 SPNVDGYGAH---LVEIDGGMLGI----GIVTQGMAK---LWVLQDYETEVWSLRYHV 291
                   AH   L+  +G +  +         G +K   LWVLQD E + WS   +V
Sbjct: 254 VMEEFIKAAHDGTLINYNGKLASLVSERYCFVDGRSKSIELWVLQDAEKKEWSKHTYV 311



>AT1G50870.1 | chr1:18855147-18856337 FORWARD LENGTH=397
          Length = 396

 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 130/351 (37%), Gaps = 42/351 (11%)

Query: 17  PDELVWEILARLPARGLLRCHAVCRDWRRLATSADFLLAHHRHQPPRPLVFGCARWRSGX 76
           P +L+ EIL RLP + +LR   V + W    T   F  ++      RP +    + +   
Sbjct: 32  PLDLILEILLRLPVKSVLRFRCVSKLWLSTTTDPYFTNSYEARSSTRPSLLMFFKNKDKL 91

Query: 77  XXXXXXXXXXXXLIRHPAERRRVLGFSDYRQHQSFKIHSSCDGLLLFVSGRAFYICNPAT 136
                          H   +        Y ++  F    S  GL+ F       I NP  
Sbjct: 92  FVFTFPHHNQNSKETHSYSQHVDSYHIKYPKYCCFPFTESVHGLISFRISTKPIIWNPTM 151

Query: 137 RQ--VTPVPALTGGGSQVTLYPHPSSGDGEYRVLKWKYPDAVC-ILAVGSS-EKPRRI-- 190
           RQ  + P P  +  G  V L   P  G  +   +        C +L +GS+ EK RRI  
Sbjct: 152 RQFLILPKPEKSWKGLSVFLGYDPVEGKHKLMCMNRDNTSDECRVLTLGSAQEKWRRIKS 211

Query: 191 GLPEAFLPPVF------------WIDEIGFLPPVLLHGCLHWHLRKPEDAILVFDTV--- 235
            L    +   +            +ID++GF+    +   + + +R  +     FDT+   
Sbjct: 212 NLKHRSILRYYGQCINGVIYYQAYIDQMGFISNPTI---MSFEVRSEK-----FDTITLP 263

Query: 236 AESFRWMVSPNVDGYGAHLVEIDGGMLGIGIVTQGMAKLWVLQDYETEVWSLRYHVKLPV 295
           + SF  M+ P    Y   L  ++  M  +     G   LW L+D E  +WS +  +    
Sbjct: 264 SGSFANMLIP----YQGRLACVNNTMDDVN----GGITLWTLEDAEKHIWSCKLFLAPLA 315

Query: 296 ARMRSIAREGFFSWKIVCHRGEILVYIQS---SVFLFLCDTKGNLREKIHL 343
              RS+  +  F    + H GE +  + +   S ++   D K N   K+  
Sbjct: 316 HYDRSLKTD--FKLDGITHAGEFIYVLSTFLKSFYVLYFDPKKNSFRKVEF 364



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.328    0.143    0.479 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,154,921
Number of extensions: 399174
Number of successful extensions: 1432
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1433
Number of HSP's successfully gapped: 2
Length of query: 382
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 282
Effective length of database: 8,364,969
Effective search space: 2358921258
Effective search space used: 2358921258
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 112 (47.8 bits)