Os04g0193300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cyclin-like F-box domain containing protein.
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Os04g0193300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cyclin-like F-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 216.46 | 0.691 | 3.46 | 0.372 | 0.499 | 0.237 | 0.725 | -4.34 | 0.0488 | 15.2 | 20.74 | 890 | -- | -- |
| 227.2 | 0.702 | 3.56 | 0.0236 | 0.554 | 1.62 | -0.367 | -- | -0.0278 | 15.9 | 18.77 | 572 | -- | -- |
| 218.01 | 0.688 | 3.46 | 0.35 | 0.504 | 0.321 | -- | -4 | 0.0485 | 15.1 | 20.53 | 869 | -- | -- |
| 224.46 | 0.698 | 3.52 | 0.115 | 0.5 | 2.06 | -- | -- | -0.00465 | 15.5 | 18.81 | 554 | -- | -- |
| 232 | 0.709 | 3.46 | 0.352 | -- | 0.512 | -- | -3.95 | 0.0516 | -- | 20.51 | 885 | -- | -- |
| 247.68 | 0.738 | 3.55 | -0.19 | 0.537 | -- | -0.0181 | -- | -0.125 | 14.8 | -- | -- | -- | -- |
| 247.68 | 0.737 | 3.55 | -0.19 | 0.537 | -- | -- | -- | -0.125 | 14.8 | -- | -- | -- | -- |
| 237.37 | 0.718 | 3.53 | 0.125 | -- | 2.1 | -- | -- | -0.0178 | -- | 18.8 | 666 | -- | -- |
| 224.62 | 0.698 | 3.53 | -- | 0.509 | 2.11 | -- | -- | -0.0355 | 15.3 | 18.77 | 473 | -- | -- |
| 264.35 | 0.76 | 3.55 | -0.213 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 248.63 | 0.738 | 3.55 | -- | 0.54 | -- | -- | -- | -0.104 | 14.8 | -- | -- | -- | -- |
| 237.75 | 0.718 | 3.53 | -- | -- | 2.05 | -- | -- | -0.0358 | -- | 18.71 | 666 | -- | -- |
| 265.55 | 0.761 | 3.55 | -- | -- | -- | -- | -- | -0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.96 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 8 | 22 |
| 6 | 217.19 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 22 |
| 12 | 217.27 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 16 | 217.33 | temperature | 20.0 | 720 | < th | dose dependent | no | NA | NA |
| 31 | 217.45 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 42 | 217.56 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 44 | 217.58 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 67 | 217.89 | temperature | 20.0 | 720 | < th | dose dependent | sin | 12 | NA |
| 73 | 217.95 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 17 | 13 |
| 91 | 218.14 | temperature | 20.0 | 720 | < th | dose dependent | rect. | 18 | 11 |
| 118 | 218.55 | temperature | 15.0 | 720 | > th | dose independent | rect. | 21 | 22 |
| 134 | 218.80 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 135 | 218.80 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 2 |
| 139 | 218.90 | temperature | 15.0 | 720 | > th | dose independent | rect. | 5 | 22 |
| 144 | 218.97 | temperature | 15.0 | 720 | > th | dose independent | rect. | 8 | 23 |
| 155 | 219.17 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 14 |
| 158 | 219.21 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 8 | 8 |
| 162 | 219.38 | temperature | 15.0 | 720 | > th | dose independent | rect. | 17 | 22 |
| 166 | 219.47 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 179 | 219.78 | temperature | 20.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 192 | 219.91 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 197 | 220.03 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 199 | 220.05 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 212 | 220.27 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 14 |
| 213 | 220.30 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 215 | 220.34 | temperature | 15.0 | 720 | > th | dose independent | rect. | 19 | 10 |
| 227 | 220.50 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 231 | 220.57 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 22 | 12 |
| 240 | 220.62 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 20 | 22 |
| 247 | 220.68 | temperature | 15.0 | 720 | > th | dose independent | rect. | 22 | 19 |
| 249 | 220.69 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 21 | 14 |
| 309 | 220.95 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 312 | 220.96 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 324 | 220.99 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 22 | NA |
| 326 | 220.99 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 336 | 221.02 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 344 | 221.05 | temperature | 15.0 | 4320 | < th | dose dependent | no | NA | NA |
| 349 | 221.05 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 9 | 22 |
| 356 | 221.06 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 12 | 23 |
| 358 | 221.06 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 16 | 23 |
| 367 | 221.08 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 23 |
| 394 | 221.13 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 414 | 221.17 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 429 | 221.20 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 455 | 221.26 | temperature | 15.0 | 4320 | < th | dose dependent | sin | 1 | NA |
| 517 | 221.37 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 535 | 221.40 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 8 | 3 |
| 538 | 221.40 | temperature | 20.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 540 | 221.40 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 553 | 221.43 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 6 | 9 |
| 566 | 221.48 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 8 | 12 |
| 615 | 221.65 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 619 | 221.65 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 6 | 5 |
| 625 | 221.66 | wind | 7.0 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 636 | 221.70 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 659 | 221.75 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 8 | 18 |
| 671 | 221.78 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 678 | 221.79 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 690 | 221.84 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 700 | 221.86 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 22 | 8 |
| 705 | 221.88 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 720 | 221.90 | radiation | 20.0 | 4320 | < th | dose independent | rect. | 18 | 12 |
| 740 | 221.95 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 20 |
| 748 | 221.96 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 19 | 13 |
| 759 | 221.99 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 773 | 222.02 | wind | 7.0 | 4320 | < th | dose independent | rect. | 8 | 2 |
| 789 | 222.07 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 797 | 222.08 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 13 | 11 |
| 801 | 222.09 | temperature | 15.0 | 720 | > th | dose independent | rect. | 15 | 18 |
| 807 | 222.10 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 810 | 222.11 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 8 | 3 |
| 822 | 222.12 | temperature | 20.0 | 4320 | < th | dose dependent | rect. | 2 | 14 |
| 828 | 222.15 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 879 | 222.24 | humidity | 50.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 884 | 222.25 | temperature | 15.0 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 920 | 222.32 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 936 | 222.34 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 952 | 222.36 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 10 | 1 |