BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0193300 Os04g0193300|AK106803
         (405 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49610.1  | chr5:20131448-20132527 REVERSE LENGTH=360           55   9e-08
AT3G52320.1  | chr3:19403020-19404192 REVERSE LENGTH=391           54   2e-07

>AT5G49610.1 | chr5:20131448-20132527 REVERSE LENGTH=360
          Length = 359

 Score = 54.7 bits (130), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 80/338 (23%), Positives = 134/338 (39%), Gaps = 56/338 (16%)

Query: 48  VVWEILVRLPPKPLLRCRQVCRAWRRLTSTGDFLLTHHRHQPTLPLVDRYKCNEEFLLGI 107
           V+ +IL RLP K L R + VC++W RL S   F            L ++    E+ L+  
Sbjct: 13  VILQILARLPVKSLFRFKSVCKSWYRLPSDKYF----------TSLFNQLSVKEQLLVAE 62

Query: 108 VS-------LDRRAAAARLQPVAQLDDTCYMMSADA--SCDGXXXXSIGGIWWFICNPIT 158
           VS       +D     + L      D     +S++    C       +    +++CNP T
Sbjct: 63  VSDSSSLICVDNLRGVSELSLDFVRDRVRIRVSSNGLLCCSSIPEKGV----YYVCNPST 118

Query: 159 RQFGALHLLCGFMVMGFYKHPPTGDYRLL-----LYRNQ---ELMSEHLIPGDRN----T 206
           R++  L       V  FY   P G+  L+     L +N+    L   H   G R      
Sbjct: 119 REYRKLPKSRERPVTRFY---PDGEATLVGLACDLSKNKFNVVLAGYHRSFGQRPDGSFI 175

Query: 207 CYVYTLGSSDVPRCIGWPETS-----ASGATVVLHCSLHWYQRSQDMILVFDTTAESFRW 261
           C V+   S+   + +   E       +    V ++  LHW       IL  D   + +R 
Sbjct: 176 CLVFDSESNKWRKFVSVLEECSFTHMSKNQVVFVNGMLHWLMSGLCYILALDVEHDVWRK 235

Query: 262 MRAPSDRMKCTLDSGN---LFDMDGKLGMYCSNDGCTIVDIWVLQDYKREIWSLKYQVEL 318
           +  P D ++     GN   L + DG L +   +D    + IW + +Y+ E WS+   + L
Sbjct: 236 ISLP-DEIRIGNGGGNRVYLLESDGFLSVIQLSD--VWMKIWKMSEYETETWSVVDSISL 292

Query: 319 PVPEIRGMLGGAYHWSAMVLSQEGDVLVLVSCDRWLFY 356
               I+G++ G +      + Q G+ + L +  + L Y
Sbjct: 293 RC--IKGLVPGIFP-----ICQTGEYVFLATHKQVLVY 323



>AT3G52320.1 | chr3:19403020-19404192 REVERSE LENGTH=391
          Length = 390

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 84/354 (23%), Positives = 138/354 (38%), Gaps = 65/354 (18%)

Query: 51  EILVRLPPKPLLRCRQVCRAWRRLTSTGDFLLTHHRHQPTLP------LVDRYKCNEEFL 104
           +IL+RLP K L+R + V + W  L ++  F  T+   +P+ P      LVDR   ++  L
Sbjct: 34  DILIRLPAKSLMRFKCVSKLWLSLITSRYF--TNRFFKPSSPSCLFAYLVDRENQSKYLL 91

Query: 105 LGIVSLDRRAAAARLQPVAQLDDTCYMMSADASCDGXXXXSIGGIWWF-------ICNPI 157
           L   S  R   +     V     T  +M       G    +  G+  +       +CNP 
Sbjct: 92  LQSSSSSRHDHSDTSVSVIDQHSTIPIMG------GYLVNAARGLLCYRTGRRVKVCNPS 145

Query: 158 TRQFGALHLL-CGFMVMGFYKHPPTGDYRLLLYRNQELMSEHLIPGDRNTCYVYTLGSSD 216
           TRQ   L ++     V  ++ H P  D   +L    E+  E  +    +   V  +G+S 
Sbjct: 146 TRQIVELPIMRSKTNVWNWFGHDPFHDEYKVLSLFWEVTKEQTVVRSEHQVLVLGVGAS- 204

Query: 217 VPRCIGWPETSASGATVVLHCSLHWYQRSQDM----------------ILVFDTTAESFR 260
                 W  T +       H   H Y R   +                ++ FD ++E F 
Sbjct: 205 ------WRNTKSHHTP---HRPFHPYSRGMTIDGVLYYSARTDANRCVLMSFDLSSEEFN 255

Query: 261 WMRAPSDRMKCTLDSGNLFDMDGKLG----MYCSNDGCTIVDIWVLQDYKREIWSLKYQV 316
            +  P +    T+      +  GK+     M  ++DG   VD+ VL+D  +  WS K   
Sbjct: 256 LIELPFENWSRTIH----MNYQGKVATCQYMRLASDG--FVDVCVLEDADKSQWSNKKTF 309

Query: 317 ELPVPEIRGMLG-----GAYHWSAMVLSQEGDVLVLVSCDRWLFYIDTEGNLLA 365
            LP+ ++  + G     GA   S  VL ++ +  +L +     F  D E N +A
Sbjct: 310 VLPISQMNFVHGDRLVVGASRDSGKVLMRKAN--LLRNQHARFFLYDMERNEIA 361



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.326    0.140    0.465 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,780,032
Number of extensions: 375536
Number of successful extensions: 1145
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1158
Number of HSP's successfully gapped: 2
Length of query: 405
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 304
Effective length of database: 8,337,553
Effective search space: 2534616112
Effective search space used: 2534616112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)