Os04g0183300 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0183300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Amidase family protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.84	(0.0345)	R²	:	0.293
β₁	:	-1.08	(0.138)	R²_dD	:	0.124	R²_D	:	0.0186
β₂	:	0.667	(0.0828)	R²_dC	:	0.102	R²_C	:	0.0785
β₃	:	-1.38	(0.149)	R²_dE	:	0.192	R²_E	:	0.0638
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	0.0231	(0.0807)	R²_dN8	:	0.000212	R²_N8	:	0.0054
σ	:	0.626
deviance	:	180.81
__

_____

C
peak time of C	:	9.35
E
wheather	:	temperature
threshold	:	23.9
memory length	:	2377
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
180.58	0.631	3.82	-1.02	0.663	-1.45	0.169	-0.391	0.0418	9.36	23.6	2409	--	--
180.73	0.626	3.84	-1.08	0.668	-1.37	0.14	--	0.0224	9.36	23.9	2377	--	--
180.68	0.626	3.83	-1.02	0.666	-1.44	--	-0.351	0.0402	9.34	23.63	2387	--	--
180.81	0.626	3.84	-1.08	0.667	-1.38	--	--	0.0231	9.35	23.9	2377	--	--
203.5	0.664	3.85	-1.06	--	-1.45	--	-0.299	0.0271	--	23.42	2832	--	--
213.97	0.686	3.76	-0.508	0.601	--	0.14	--	0.365	8.85	--	--	--	--
214.03	0.685	3.76	-0.503	0.6	--	--	--	0.365	8.83	--	--	--	--
203.68	0.665	3.86	-1.1	--	-1.38	--	--	0.0233	--	24.02	2830	--	--
202.64	0.663	3.79	--	0.662	-1.05	--	--	0.236	9.42	24.71	1101	--	--
234.55	0.716	3.78	-0.503	--	--	--	--	0.369	--	--	--	--	--
220.7	0.695	3.75	--	0.599	--	--	--	0.421	8.89	--	--	--	--
225.01	0.699	3.81	--	--	-1	--	--	0.243	--	25.4	1403	--	--
241.22	0.725	3.76	--	--	--	--	--	0.425	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	181.95	temperature	25	1440	< th	dose dependent	rect.	20	1
13	182.54	temperature	20	4320	> th	dose independent	rect.	21	2
15	182.58	temperature	20	4320	> th	dose independent	rect.	17	7
25	182.76	temperature	20	4320	> th	dose independent	rect.	13	11
41	183.03	temperature	25	1440	< th	dose dependent	sin	17	NA
57	183.16	temperature	25	1440	< th	dose dependent	rect.	11	15
61	183.20	temperature	20	4320	< th	dose independent	rect.	21	2
64	183.22	temperature	25	1440	< th	dose dependent	rect.	11	12
97	183.47	temperature	15	1440	> th	dose dependent	rect.	20	1
119	183.56	temperature	20	4320	< th	dose independent	rect.	18	6
146	183.66	temperature	20	4320	> th	dose independent	sin	17	NA
192	183.79	temperature	20	4320	< th	dose independent	rect.	13	11
298	184.05	temperature	25	1440	< th	dose dependent	rect.	1	22
314	184.09	temperature	25	1440	< th	dose dependent	rect.	13	23
328	184.14	temperature	25	1440	< th	dose dependent	no	NA	NA
332	184.14	temperature	15	1440	> th	dose dependent	rect.	17	9
490	184.44	temperature	20	4320	< th	dose independent	sin	17	NA
527	184.50	temperature	25	720	< th	dose dependent	rect.	22	19
581	184.61	temperature	15	1440	> th	dose dependent	sin	14	NA
704	184.82	temperature	25	720	< th	dose dependent	sin	3	NA
857	185.09	temperature	20	1440	< th	dose independent	rect.	4	4
908	185.16	temperature	20	4320	> th	dose independent	rect.	4	20
999	185.28	temperature	30	270	< th	dose dependent	rect.	22	23