BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0183300 Os04g0183300|AK100045
         (210 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34880.1  | chr4:16615549-16617424 FORWARD LENGTH=467           75   3e-14

>AT4G34880.1 | chr4:16615549-16617424 FORWARD LENGTH=467
          Length = 466

 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 46/79 (58%)

Query: 105 LHGVPVLLKDSIATRDRLNTTAGSLALLGSXXXXXXXXXXXXXXXXXXXXXKANLDEWAN 164
           LHGVPVLLKDSI+T+D+LNTTAGS ALLGS                     KA+L EWA+
Sbjct: 109 LHGVPVLLKDSISTKDKLNTTAGSFALLGSVVARDAGVVKRLRESGAVILGKASLSEWAH 168

Query: 165 FRTIQGTGGWSARGGQSRV 183
           FR+     GWSA    S V
Sbjct: 169 FRSFSIPDGWSAPSQNSVV 187



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,933,365
Number of extensions: 42974
Number of successful extensions: 74
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)