Os04g0177600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin/actin-like family protein.
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Os04g0177600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin/actin-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.49 | 0.202 | 9.71 | 0.25 | 0.28 | 0.448 | 0.00854 | 0.79 | 0.0893 | 2.31 | 20.73 | 1408 | -- | -- |
| 19.43 | 0.205 | 9.73 | 0.123 | 0.298 | 0.307 | 0.0143 | -- | 0.0646 | 2.29 | 21.7 | 1619 | -- | -- |
| 18.14 | 0.198 | 9.71 | 0.295 | 0.277 | 0.397 | -- | 0.779 | 0.0906 | 2.27 | 21.4 | 1374 | -- | -- |
| 19.38 | 0.205 | 9.74 | 0.11 | 0.286 | 0.32 | -- | -- | 0.0438 | 2.27 | 21.7 | 1528 | -- | -- |
| 22.54 | 0.221 | 9.71 | 0.292 | -- | 0.415 | -- | 0.745 | 0.0864 | -- | 21.39 | 1240 | -- | -- |
| 22.66 | 0.223 | 9.72 | 0.241 | 0.292 | -- | 0.0221 | -- | 0.141 | 2.28 | -- | -- | -- | -- |
| 22.66 | 0.223 | 9.72 | 0.241 | 0.292 | -- | -- | -- | 0.141 | 2.28 | -- | -- | -- | -- |
| 23.77 | 0.227 | 9.74 | 0.109 | -- | 0.359 | -- | -- | 0.0478 | -- | 21.37 | 1192 | -- | -- |
| 19.67 | 0.207 | 9.74 | -- | 0.287 | 0.345 | -- | -- | 0.0351 | 2.08 | 21.7 | 1542 | -- | -- |
| 27.72 | 0.246 | 9.71 | 0.253 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 24.19 | 0.23 | 9.72 | -- | 0.296 | -- | -- | -- | 0.114 | 2.29 | -- | -- | -- | -- |
| 24.05 | 0.228 | 9.74 | -- | -- | 0.393 | -- | -- | 0.0277 | -- | 21.35 | 1206 | -- | -- |
| 29.41 | 0.253 | 9.72 | -- | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.76 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 2 | 17.79 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 5 |
| 4 | 17.83 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 10 |
| 5 | 17.85 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 26 | 18.01 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 27 | 18.02 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 33 | 18.07 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 1 |
| 38 | 18.07 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 6 |
| 42 | 18.11 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 55 | 18.17 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 59 | 18.18 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 4 |
| 63 | 18.19 | wind | 3.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 69 | 18.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 82 | 18.24 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 90 | 18.26 | wind | 3.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 94 | 18.27 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 102 | 18.29 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 11 |
| 105 | 18.30 | wind | 1.0 | 14400 | > th | dose independent | rect. | 3 | 4 |
| 118 | 18.32 | wind | 1.0 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 125 | 18.33 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 136 | 18.35 | wind | 1.0 | 14400 | < th | dose independent | rect. | 3 | 5 |
| 140 | 18.36 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 141 | 18.36 | wind | 3.0 | 14400 | > th | dose independent | rect. | 22 | 11 |
| 209 | 18.46 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 273 | 18.53 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 299 | 18.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 300 | 18.55 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 309 | 18.55 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 315 | 18.56 | wind | 3.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 316 | 18.56 | wind | 3.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 320 | 18.56 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 332 | 18.57 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 334 | 18.57 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 350 | 18.59 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 357 | 18.59 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 2 |
| 427 | 18.65 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 460 | 18.67 | wind | 3.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 466 | 18.67 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 506 | 18.69 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 9 |
| 587 | 18.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 589 | 18.74 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 631 | 18.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 7 |
| 645 | 18.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 7 |
| 718 | 18.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 719 | 18.80 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 1 | 6 |
| 723 | 18.80 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 741 | 18.81 | temperature | 20.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 744 | 18.81 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 1 | 6 |
| 749 | 18.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 760 | 18.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 768 | 18.82 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 769 | 18.82 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 806 | 18.83 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 859 | 18.85 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 874 | 18.85 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 957 | 18.88 | temperature | 20.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 959 | 18.88 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 3 | 1 |