BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0177600 Os04g0177600|AK105285
(586 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0177600 Actin/actin-like family protein 1220 0.0
>Os04g0177600 Actin/actin-like family protein
Length = 586
Score = 1220 bits (3157), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 586/586 (100%), Positives = 586/586 (100%)
Query: 1 MDYLKTVVPSQLMAERGANLVVINPGSSNVRIGFASQDVPFNIPHCIARHITQQKDDTPR 60
MDYLKTVVPSQLMAERGANLVVINPGSSNVRIGFASQDVPFNIPHCIARHITQQKDDTPR
Sbjct: 1 MDYLKTVVPSQLMAERGANLVVINPGSSNVRIGFASQDVPFNIPHCIARHITQQKDDTPR 60
Query: 61 LSVRDKMLNCHATPSQNAERERAYDIIASLLKIPFLDEDMPSANQALPPKMGRVDALSSQ 120
LSVRDKMLNCHATPSQNAERERAYDIIASLLKIPFLDEDMPSANQALPPKMGRVDALSSQ
Sbjct: 61 LSVRDKMLNCHATPSQNAERERAYDIIASLLKIPFLDEDMPSANQALPPKMGRVDALSSQ 120
Query: 121 QNKDDSKFTWTDVMDRSIKSSTPIVDKDADVDPLQRSTPDDTEPNSEENMYKEIIFGEDA 180
QNKDDSKFTWTDVMDRSIKSSTPIVDKDADVDPLQRSTPDDTEPNSEENMYKEIIFGEDA
Sbjct: 121 QNKDDSKFTWTDVMDRSIKSSTPIVDKDADVDPLQRSTPDDTEPNSEENMYKEIIFGEDA 180
Query: 181 LKIPPSESYCLSHPIRRGHFNISQDYSLHQVLEDLRTIWNWILTEKLHINPRDRHLYSAI 240
LKIPPSESYCLSHPIRRGHFNISQDYSLHQVLEDLRTIWNWILTEKLHINPRDRHLYSAI
Sbjct: 181 LKIPPSESYCLSHPIRRGHFNISQDYSLHQVLEDLRTIWNWILTEKLHINPRDRHLYSAI 240
Query: 241 LVLGETFDNREIKEMLSIVLCDLGFSTAVIHQEALAAAFGNGLSTSCVVNIGAQVTQVVC 300
LVLGETFDNREIKEMLSIVLCDLGFSTAVIHQEALAAAFGNGLSTSCVVNIGAQVTQVVC
Sbjct: 241 LVLGETFDNREIKEMLSIVLCDLGFSTAVIHQEALAAAFGNGLSTSCVVNIGAQVTQVVC 300
Query: 301 VEDGVALPHTALALPYGGDDISRCLLWVQRRHCTWPNFQTDPVNKPIDMLMLNKLKESYS 360
VEDGVALPHTALALPYGGDDISRCLLWVQRRHCTWPNFQTDPVNKPIDMLMLNKLKESYS
Sbjct: 301 VEDGVALPHTALALPYGGDDISRCLLWVQRRHCTWPNFQTDPVNKPIDMLMLNKLKESYS 360
Query: 361 QIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPRSWFQD 420
QIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPRSWFQD
Sbjct: 361 QIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPRSWFQD 420
Query: 421 YDDMLEDTWQTSDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIEL 480
YDDMLEDTWQTSDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIEL
Sbjct: 421 YDDMLEDTWQTSDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILSTGRIEL 480
Query: 481 QRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPWKGGVI 540
QRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPWKGGVI
Sbjct: 481 QRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPWKGGVI 540
Query: 541 LGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYNS 586
LGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYNS
Sbjct: 541 LGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYNS 586
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,017,935
Number of extensions: 1002986
Number of successful extensions: 2305
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2306
Number of HSP's successfully gapped: 1
Length of query: 586
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 480
Effective length of database: 11,501,117
Effective search space: 5520536160
Effective search space used: 5520536160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)