BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0177600 Os04g0177600|AK105285
         (586 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G43500.1  | chr5:17470038-17473429 FORWARD LENGTH=597          648   0.0  
AT3G27000.1  | chr3:9952787-9955784 REVERSE LENGTH=390             61   2e-09
AT2G42090.1  | chr2:17556744-17558369 FORWARD LENGTH=367           49   7e-06

>AT5G43500.1 | chr5:17470038-17473429 FORWARD LENGTH=597
          Length = 596

 Score =  648 bits (1671), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 324/590 (54%), Positives = 411/590 (69%), Gaps = 14/590 (2%)

Query: 2   DYLKTVVPSQLMAERGANLVVINPGSSNVRIGFASQDVPFNIPHCIARHITQQKDDTPRL 61
           DYLKTV P+Q+++ERGANLVVIN GS+NVR+G A  + PFN+P+CIAR+ITQ    T   
Sbjct: 14  DYLKTVAPTQILSERGANLVVINLGSANVRVGLAMDEKPFNVPNCIARYITQSGKPT--- 70

Query: 62  SVRDKMLNCHATPSQNAERERAYDIIASLLKIPFLDEDMPSANQALPPKMGRVDALSSQQ 121
            V D+MLN   T +Q+ +RERAY+  ASLLKI FLDE   S + +   KMGR+D  +   
Sbjct: 71  -VVDQMLNTEVTTNQHVDRERAYNSAASLLKILFLDESSSSGSASR--KMGRIDGYNQAS 127

Query: 122 N-KDDSKFTWTDVM-DRSIKSSTPIV---DK-DADVDPLQRSTPDDTEPNSEENMYKEII 175
             K DS FTWTDV  D  I  ++P     DK DA          D  + +  +  Y+++I
Sbjct: 128 TIKKDSVFTWTDVYEDEKISLASPAETSPDKGDASASEAVPDVTDSKDTSESKRKYRKMI 187

Query: 176 FGEDALKIPPSESYCLSHPIRRGHFNISQDYSLHQVLEDLRTIWNWILTEKLHINPRDRH 235
           FGE+ALKI P E YCL HPIRRGHFN+S  YS  +V EDL  I +WIL EKLHI  ++R 
Sbjct: 188 FGEEALKISPKEPYCLYHPIRRGHFNVSPHYSAQRVCEDLTAILDWILLEKLHITHKERF 247

Query: 236 LYSAILVLGETFDNREIKEMLSIVLCDLGFSTAVIHQEALAAAFGNGLSTSCVVNIGAQV 295
            + A++V+ ETFD REIKEML+IVL +L F++AV+HQE L+A FGNGL+T+C+VNIGAQ 
Sbjct: 248 SFHAVIVVPETFDTREIKEMLTIVLGELYFNSAVVHQEGLSAVFGNGLTTACIVNIGAQT 307

Query: 296 TQVVCVEDGVALPHTALALPYGGDDISRCLLWVQRRHCTWPNFQTDPVNKPIDMLMLNKL 355
           + VVCVEDGV+LP+T   LP+GG+DI RCLLW+QR +  WP   TD + KPIDMLMLN+L
Sbjct: 308 STVVCVEDGVSLPNTEKILPFGGEDICRCLLWIQRHYQKWPQINTDVLAKPIDMLMLNQL 367

Query: 356 KESYSQIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGLLYPRVLVPEEYPPPPR 415
           KES+ +IR+G  + V+ VHSYE        KT L++LNVPPMGL YP +LVPE +P PPR
Sbjct: 368 KESFCEIRAGELETVATVHSYEEGMPAVPHKTNLTSLNVPPMGLFYPNLLVPEIFPQPPR 427

Query: 416 SWFQDYDDMLEDTWQTSDSLYSSGNGGFGMWDNYPMFPTRLKKFDNIGLVEAIVSSILST 475
            WFQDY++MLEDTW         GN G  MWD++   P++ KK + IGL EAI SSILS 
Sbjct: 428 QWFQDYENMLEDTWNM--DFGGGGNMGLPMWDSFAFSPSKPKKEEKIGLAEAITSSILSA 485

Query: 476 GRIELQRKLFCSIQLVGGTASTAGLAPVLEQRVLNTIPSNQPIEKAEVLQSRSYPLFVPW 535
           GRI+L+RKLF SIQL+GG   T GL   +E+RVL+ IP  + I+  +VL SR+ P FV W
Sbjct: 486 GRIDLRRKLFSSIQLIGGAGLTKGLVAAVEERVLHAIPPTEAIDTVQVLPSRTEPQFVTW 545

Query: 536 KGGVILGVLDIGRDAWIHREDWAKNGVHIGSGRKYRDSYFLQAQAMCYYN 585
           KGG ILG+LD GR+AWI R  W  NGV+ G  +KY+DSY LQ QAM + N
Sbjct: 546 KGGAILGILDFGREAWIERHQWMVNGVNKGGLKKYKDSYHLQGQAMYFIN 595



>AT3G27000.1 | chr3:9952787-9955784 REVERSE LENGTH=390
          Length = 389

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 96/412 (23%), Positives = 163/412 (39%), Gaps = 83/412 (20%)

Query: 163 EPNSEENMYKEIIFGEDALKIPPSESYCLSHPIRRGHFNISQDYSLHQVLEDLRTIWNWI 222
           E +  E   K+I+ GE   ++       +++P+  G   I Q++      +D+  +W+  
Sbjct: 42  EESLMEQQVKDIVVGETCSEL--RHQLDINYPVHNG---IVQNW------DDMEHVWDHA 90

Query: 223 LTEKLHINPRDRHLYSAILVLGETFD---NREIKEMLSIVLCDLGFSTAVIHQEALAAAF 279
              +L INP D      IL+     +   NRE  +M+  +     F+   I  +A+   +
Sbjct: 91  FYNELKINPSD----CKILLTDPPLNPSKNRE--KMIETMFEKYNFAGVFIQIQAVLTLY 144

Query: 280 GNGLSTSCVVNIGAQVTQVVCVEDGVALPHTALALPYGGDDISRCLLWVQRRHCTWPNFQ 339
             GL T  V++ G  VT VV V DG + PH    +   G  I+  L+ +  R       +
Sbjct: 145 AQGLLTGLVIDSGDGVTHVVPVVDGYSFPHLTKRMNVAGRHITAYLVDLLSR-------R 197

Query: 340 TDPVNKPIDMLMLNKLKESYSQIRSGSFDAVSVVHSYEHEKSVGHQKTKLSALNVPPMGL 399
              +NK  D   + ++KE    I   S+D       Y+ E  +G + T L      P G 
Sbjct: 198 GYAMNKTADFETVREIKEKLCYI---SYD-------YKRESQLGLETTILVKNYTLPDGR 247

Query: 400 LYPRVLVPEEYPPPPRSWFQDYDDMLEDTWQTSDSLYSSGNGGFGMWDNYPMFPTRLKKF 459
           +   + V  E    P + F            T + +   G+   GM D            
Sbjct: 248 V---IKVGTERFQAPEALF------------TPELIDVEGD---GMAD------------ 277

Query: 460 DNIGLVEAIVSSILSTGRIELQRKLFCSIQLVGGTASTAGLAPVLEQ----RVLNTI-PS 514
                   +V   +    I+ +  L+  I L GG+    GL   LE+    R L+T+   
Sbjct: 278 --------MVFRCIQEMDIDNRMMLYQHIVLSGGSTMYPGLPSRLEKEIQDRYLDTVLKG 329

Query: 515 NQPIEKAEVLQSRSYPL---FVPWKGGVILGVLDIGRDAWIHREDWAKNGVH 563
           N+   K   L+    P     V   G V+ G++    + WI+RED+ + G++
Sbjct: 330 NKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGIMKDAPEFWINREDYMEEGIN 381



>AT2G42090.1 | chr2:17556744-17558369 FORWARD LENGTH=367
          Length = 366

 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 59/117 (50%), Gaps = 5/117 (4%)

Query: 213 EDLRTIWNWILTEKLHINPRDRHLYSAILVLGETFDNREIKE-MLSIVLCDLGFSTAVIH 271
           +D+  IW++    +L ++P +      +L+    ++ +  +E M  I+          + 
Sbjct: 71  DDMEKIWHYTFYNELRVDPEEH----PVLLTEAPYNPKANREKMTQIMFESFDVPAMYVS 126

Query: 272 QEALAAAFGNGLSTSCVVNIGAQVTQVVCVEDGVALPHTALALPYGGDDISRCLLWV 328
            +++   + +G +T  V+++G +V+  V V +G ALPH  L L  GG D++  L+ +
Sbjct: 127 MQSVLYLYSSGRTTGVVLDLGERVSHTVPVYEGYALPHGILRLDLGGRDLTDYLIEI 183



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,879,854
Number of extensions: 635039
Number of successful extensions: 1663
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1668
Number of HSP's successfully gapped: 3
Length of query: 586
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 482
Effective length of database: 8,255,305
Effective search space: 3979057010
Effective search space used: 3979057010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)