Os04g0162500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, C2H2-type domain containing protein.
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Os04g0162500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, C2H2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123.52 | 0.522 | 5.83 | -0.141 | 1.98 | 2.64 | 0.271 | 0.665 | -0.495 | 4.94 | 14.8 | 737 | -- | -- |
| 123.86 | 0.518 | 5.84 | -0.263 | 1.93 | 2.62 | 0.199 | -- | -0.526 | 4.93 | 14.99 | 756 | -- | -- |
| 123.61 | 0.518 | 5.83 | -0.145 | 1.92 | 2.61 | -- | 0.653 | -0.495 | 4.94 | 14.8 | 770 | -- | -- |
| 123.94 | 0.518 | 5.84 | -0.26 | 1.92 | 2.6 | -- | -- | -0.525 | 4.94 | 15.13 | 770 | -- | -- |
| 243.83 | 0.727 | 5.86 | -0.163 | -- | 2.79 | -- | 0.964 | -0.51 | -- | 8.569 | 1178 | -- | -- |
| 214.33 | 0.686 | 5.77 | 0.416 | 1.72 | -- | -0.0208 | -- | -0.116 | 3.77 | -- | -- | -- | -- |
| 214.34 | 0.686 | 5.77 | 0.416 | 1.72 | -- | -- | -- | -0.116 | 3.77 | -- | -- | -- | -- |
| 244.48 | 0.728 | 5.89 | -0.346 | -- | 2.66 | -- | -- | -0.569 | -- | 15.84 | 1178 | -- | -- |
| 125.54 | 0.522 | 5.84 | -- | 1.94 | 2.48 | -- | -- | -0.496 | 4.9 | 15.46 | 757 | -- | -- |
| 377.11 | 0.907 | 5.77 | 0.487 | -- | -- | -- | -- | -0.0702 | -- | -- | -- | -- | -- |
| 218.89 | 0.692 | 5.78 | -- | 1.73 | -- | -- | -- | -0.162 | 3.77 | -- | -- | -- | -- |
| 247.21 | 0.732 | 5.87 | -- | -- | 2.44 | -- | -- | -0.508 | -- | 16.4 | 1178 | -- | -- |
| 383.37 | 0.914 | 5.78 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 117.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 4 | 118.31 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 20 |
| 5 | 118.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 6 | 118.50 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 9 | 118.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 10 | 118.99 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 17 | 119.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 36 | 120.20 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 38 | 120.30 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 96 | 121.77 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 173 | 123.59 | temperature | 15 | 720 | > th | dose dependent | no | NA | NA |
| 181 | 123.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 223 | 124.16 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 235 | 124.37 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 255 | 124.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 23 |
| 288 | 125.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 313 | 125.28 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 23 |
| 491 | 126.18 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 6 |
| 503 | 126.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 6 |
| 509 | 126.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 742 | 126.73 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 747 | 126.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 885 | 127.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 4 |