BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0162500 Os04g0162500|AK108645
(289 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0162500 Zinc finger, C2H2-type domain containing protein 363 e-101
Os02g0823900 134 6e-32
>Os04g0162500 Zinc finger, C2H2-type domain containing protein
Length = 289
Score = 363 bits (932), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/289 (67%), Positives = 196/289 (67%)
Query: 1 SLAIANLFLATLAHSTSYSLPLFLLPSWRKKADMALCLMLLASGGHGXXXXXXXXXXXXX 60
SLAIANLFLATLAHSTSYSLPLFLLPSWRKKADMALCLMLLASGGHG
Sbjct: 1 SLAIANLFLATLAHSTSYSLPLFLLPSWRKKADMALCLMLLASGGHGERAPDAEAVAAKE 60
Query: 61 XKFRSRRPADGAGAGEFVYECKTCSKCFPSFQALGGHRTSHKKPRLVXXXXXXXXXXDDK 120
KFRSRRPADGAGAGEFVYECKTCSKCFPSFQALGGHRTSHKKPRLV DDK
Sbjct: 61 AKFRSRRPADGAGAGEFVYECKTCSKCFPSFQALGGHRTSHKKPRLVAPPAAMEPAADDK 120
Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPTVLAIPVIPKQEVLDATNSAAIASV 180
DPTVLAIPVIPKQEVLDATNSAAIASV
Sbjct: 121 IKPTIPETAAAAAEEKPPKPSPPRPPASRPIATDPTVLAIPVIPKQEVLDATNSAAIASV 180
Query: 181 SKQPRVHECSICGAEFASGQALGGHMRRHRPLIPXXXXXXXXXXXXXXXXPRQKEKSLLE 240
SKQPRVHECSICGAEFASGQALGGHMRRHRPLIP PRQKEKSLLE
Sbjct: 181 SKQPRVHECSICGAEFASGQALGGHMRRHRPLIPASASSAVVSVLDAVDAPRQKEKSLLE 240
Query: 241 LDLNMPAPCDDXXXXXXXXXXXXXXXXXXXXVSDRSPLLVPAALVGCHY 289
LDLNMPAPCDD VSDRSPLLVPAALVGCHY
Sbjct: 241 LDLNMPAPCDDATAETTTTSSAATSPAFAFAVSDRSPLLVPAALVGCHY 289
>Os02g0823900
Length = 327
Score = 134 bits (338), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 90/231 (38%), Positives = 103/231 (44%), Gaps = 20/231 (8%)
Query: 69 ADGAGAGEFVYECKTCSKCFPSFQALGGHRTSHKKPRLVXXXXXXXXXXDDKXXXXXXXX 128
ADG AG +VYECKTC+KCFP+FQALGGHR SHKKPRL +
Sbjct: 107 ADGVRAGFYVYECKTCNKCFPTFQALGGHRASHKKPRLPGADDDNVNNVTNTNAIVVKSK 166
Query: 129 XXXXXXXXXXXXXXXXXXXXXXXXXDPTVLAIPVIPKQEVLDATNSAAIASVSKQPRVHE 188
D T VL N AA S+ + RVHE
Sbjct: 167 PPLTTTTTPSAPSPPPPQADAVVVPDVTT----------VLSLNNVAAAGSIINKLRVHE 216
Query: 189 CSICGAEFASGQALGGHMRRHRPLI--PXXXXXXXXXXXXXXXXPRQKEKSL----LELD 242
CSICGAEF SGQALGGHMRRHRPL P P K++ LELD
Sbjct: 217 CSICGAEFGSGQALGGHMRRHRPLHAPPERAATTAATTAATATAPDTKKEGSTSINLELD 276
Query: 243 LNMPAPCDDXXXXXXXXXXXXXXXXXXXXVSD-RSPLL---VPAALVGCHY 289
LN+PAP D+ +D + P+L AALVGCHY
Sbjct: 277 LNLPAPSDEESVSPPPPPPPPVLLALGGQFNDGKKPILQLTASAALVGCHY 327
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,364,496
Number of extensions: 236671
Number of successful extensions: 779
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 776
Number of HSP's successfully gapped: 3
Length of query: 289
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 189
Effective length of database: 11,814,401
Effective search space: 2232921789
Effective search space used: 2232921789
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)