BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0162500 Os04g0162500|AK108645
(289 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G04390.1 | chr5:1239166-1240254 FORWARD LENGTH=363 101 4e-22
AT2G28200.1 | chr2:12024321-12025181 FORWARD LENGTH=287 70 1e-12
AT5G03510.1 | chr5:880353-881231 FORWARD LENGTH=293 67 8e-12
AT3G10470.1 | chr3:3260424-3261620 FORWARD LENGTH=399 62 4e-10
AT3G49930.1 | chr3:18510246-18510893 FORWARD LENGTH=216 57 1e-08
AT3G53600.1 | chr3:19875532-19876059 FORWARD LENGTH=176 54 8e-08
AT2G37430.1 | chr2:15706454-15706990 FORWARD LENGTH=179 54 1e-07
AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157 50 2e-06
AT3G46080.1 | chr3:16922753-16923247 REVERSE LENGTH=165 49 2e-06
AT5G59820.1 | chr5:24103073-24103561 FORWARD LENGTH=163 49 3e-06
AT3G60580.1 | chr3:22394007-22394873 FORWARD LENGTH=289 49 4e-06
AT3G46090.1 | chr3:16926304-16926810 REVERSE LENGTH=169 47 8e-06
>AT5G04390.1 | chr5:1239166-1240254 FORWARD LENGTH=363
Length = 362
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/299 (29%), Positives = 109/299 (36%), Gaps = 77/299 (25%)
Query: 33 DMALCLMLLASGGHGXXXXXX---XXXXXXXXKFRSRR------PADGAGAGEFVYECKT 83
D+A CL+LLA G H +F SRR G AG +VY+CKT
Sbjct: 99 DIANCLILLAQG-HSLPHNNHHLPNSNNNNTYRFTSRRFLETSSSNSGGKAGYYVYQCKT 157
Query: 84 CSKCFPSFQALGGHRTSHKKPRLVXXXXXXXXXXDDKXXXXXXXXXXXXXXXXXXXXXXX 143
C + FPSFQALGGHR SHKKP+ +
Sbjct: 158 CDRTFPSFQALGGHRASHKKPKAASFYSNLDLKKN------------------------- 192
Query: 144 XXXXXXXXXXDPTVLAIPVIPKQEVLDATNSAAIASVSK--QPRVHECSICGAEFASGQA 201
D L V V NS ++ K + +VHEC ICGAEF SGQA
Sbjct: 193 ------TYANDAVSL---VHTTTTVFKNNNSRSLVVYGKASKNKVHECGICGAEFTSGQA 243
Query: 202 LGGHMRRHR----------PLIPXXXXXXXXXXXXXXXX---------------PRQKEK 236
LGGHMRRHR P + ++K +
Sbjct: 244 LGGHMRRHRGAVVVPAVIAPTVTVATAAANTELSLSSMSFDQISDGHQDHLAMPAKKKAR 303
Query: 237 SL--LELDLNMPAPCDDXXXXXXXXXXXXXXXXXXXXVSDR----SPLLVPAALVGCHY 289
++ L+LDLN+PAP D+ R S +L LV CHY
Sbjct: 304 TVVSLDLDLNLPAPEDENRVNGFSFASKQNHEQEHQQKKQREEPKSLVLSAPTLVDCHY 362
>AT2G28200.1 | chr2:12024321-12025181 FORWARD LENGTH=287
Length = 286
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 46/88 (52%), Gaps = 10/88 (11%)
Query: 174 SAAIASVSKQPRVHECSICGAEFASGQALGGHMRRHRPLIPXXXXXXXXXXXXXXXXPR- 232
S A ++K +VHECSICG+EF SGQALGGHMRRHR +
Sbjct: 177 SQASNIINKANKVHECSICGSEFTSGQALGGHMRRHRTAVTTISPVAATAEVSRNSTEEE 236
Query: 233 ---------QKEKSLLELDLNMPAPCDD 251
++++ L LDLN+PAP DD
Sbjct: 237 IEINIGRSMEQQRKYLPLDLNLPAPEDD 264
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 29 RKKADMALCLMLLASGGHGXXXXXXXXXXXXXXKFRSRRPADGAGAGEFVYECKTCSKCF 88
+++ DMA+CL++LA G K + ++ + +VYECKTC++ F
Sbjct: 72 QEEEDMAICLIMLARG-----TVLPSPDLKNSRKIHQKISSENSSF--YVYECKTCNRTF 124
Query: 89 PSFQALGGHRTSHKKPR 105
SFQALGGHR SHKKPR
Sbjct: 125 SSFQALGGHRASHKKPR 141
>AT5G03510.1 | chr5:880353-881231 FORWARD LENGTH=293
Length = 292
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 33 DMALCLMLLASGGHGXXXXXXXXXXXXXXKFRSRRPADGAGAG-EFVYECKTCSKCFPSF 91
DMA CL+LL S GH F +++P G G + VY+CKTC K F SF
Sbjct: 72 DMANCLILL-SQGHQAKSSDDHLSMQRMGFFSNKKPVASLGLGLDGVYQCKTCDKSFHSF 130
Query: 92 QALGGHRTSHKKPRL 106
QALGGHR SHKKP+L
Sbjct: 131 QALGGHRASHKKPKL 145
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 44/77 (57%), Gaps = 6/77 (7%)
Query: 181 SKQP-RVHECSICGAEFASGQALGGHMRRHRPLIPXXXXXXXXXXXXXXXXPRQ-----K 234
SK+P + HECSIC AEF+SGQALGGHMRRHR L +
Sbjct: 185 SKKPEKTHECSICKAEFSSGQALGGHMRRHRGLTINANATSAIKTAISSSSHHHHEESIR 244
Query: 235 EKSLLELDLNMPAPCDD 251
K+ L+LDLN+PAP D+
Sbjct: 245 PKNFLQLDLNLPAPEDE 261
>AT3G10470.1 | chr3:3260424-3261620 FORWARD LENGTH=399
Length = 398
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 24/32 (75%), Positives = 28/32 (87%)
Query: 74 AGEFVYECKTCSKCFPSFQALGGHRTSHKKPR 105
AG +VY+CKTC + FPSFQALGGHR SHKKP+
Sbjct: 177 AGYYVYQCKTCDRTFPSFQALGGHRASHKKPK 208
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 23/26 (88%), Positives = 24/26 (92%)
Query: 185 RVHECSICGAEFASGQALGGHMRRHR 210
+VHEC ICGAEF SGQALGGHMRRHR
Sbjct: 259 KVHECGICGAEFTSGQALGGHMRRHR 284
>AT3G49930.1 | chr3:18510246-18510893 FORWARD LENGTH=216
Length = 215
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 48/131 (36%), Gaps = 53/131 (40%)
Query: 79 YECKTCSKCFPSFQALGGHRTSHKKPRLVXXXXXXXXXXDDKXXXXXXXXXXXXXXXXXX 138
Y+C C K FPS+QALGGH+TSH+KP
Sbjct: 94 YKCSVCGKSFPSYQALGGHKTSHRKP---------------------------------- 119
Query: 139 XXXXXXXXXXXXXXXDPTVLAIPVIPKQEVLDATNSAAIASVSKQPRVHECSICGAEFAS 198
+++ V + + + V + + H CSIC F S
Sbjct: 120 -------------------VSVDVNNSNGTVTNNGNISNGLVGQSGKTHNCSICFKSFPS 160
Query: 199 GQALGGHMRRH 209
GQALGGH R H
Sbjct: 161 GQALGGHKRCH 171
>AT3G53600.1 | chr3:19875532-19876059 FORWARD LENGTH=176
Length = 175
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 21/29 (72%), Positives = 26/29 (89%)
Query: 79 YECKTCSKCFPSFQALGGHRTSHKKPRLV 107
+ECKTC++ F SFQALGGHR SHKKP+L+
Sbjct: 49 FECKTCNRKFDSFQALGGHRASHKKPKLI 77
>AT2G37430.1 | chr2:15706454-15706990 FORWARD LENGTH=179
Length = 178
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 15/78 (19%)
Query: 30 KKADMALCLMLLASGGHGXXXXXXXXXXXXXXKFRSRRPADGAGAGEFVYECKTCSKCFP 89
K D+A CLM+LA + + + + +F ECKTC+K F
Sbjct: 13 KNIDIAKCLMILAQ-------------TSMVKQIGLNQHTESHTSNQF--ECKTCNKRFS 57
Query: 90 SFQALGGHRTSHKKPRLV 107
SFQALGGHR SHKKP+L
Sbjct: 58 SFQALGGHRASHKKPKLT 75
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 21/29 (72%)
Query: 182 KQPRVHECSICGAEFASGQALGGHMRRHR 210
K H+CSIC F +GQALGGHMRRHR
Sbjct: 89 KGNHFHKCSICSQSFGTGQALGGHMRRHR 117
>AT2G28710.1 | chr2:12322974-12323444 FORWARD LENGTH=157
Length = 156
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/27 (77%), Positives = 23/27 (85%)
Query: 183 QPRVHECSICGAEFASGQALGGHMRRH 209
+P HEC ICGAEFA GQALGGHMR+H
Sbjct: 74 KPVKHECPICGAEFAVGQALGGHMRKH 100
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 23/26 (88%)
Query: 78 VYECKTCSKCFPSFQALGGHRTSHKK 103
V+ CKTC+K FPSFQALGGHR SH++
Sbjct: 33 VFACKTCNKEFPSFQALGGHRASHRR 58
>AT3G46080.1 | chr3:16922753-16923247 REVERSE LENGTH=165
Length = 164
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/39 (61%), Positives = 26/39 (66%)
Query: 65 SRRPADGAGAGEFVYECKTCSKCFPSFQALGGHRTSHKK 103
SR G G + V+ CKTC K F SFQALGGHR SHKK
Sbjct: 23 SRVGECGGGGEKRVFRCKTCLKEFSSFQALGGHRASHKK 61
>AT5G59820.1 | chr5:24103073-24103561 FORWARD LENGTH=163
Length = 162
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 24/33 (72%)
Query: 72 AGAGEFVYECKTCSKCFPSFQALGGHRTSHKKP 104
G + V+ CKTC K F SFQALGGHR SHKKP
Sbjct: 32 GGDQKRVFTCKTCLKQFHSFQALGGHRASHKKP 64
>AT3G60580.1 | chr3:22394007-22394873 FORWARD LENGTH=289
Length = 288
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 79 YECKTCSKCFPSFQALGGHRTSHKKPRL 106
Y+C+TC K F S+QALGGHR SHKK R+
Sbjct: 173 YKCETCGKVFKSYQALGGHRASHKKNRV 200
>AT3G46090.1 | chr3:16926304-16926810 REVERSE LENGTH=169
Length = 168
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 166 QEVLDATNSAAIASVS--KQPRVHECSICGAEFASGQALGGHMRRHR 210
++++++ N + + S+S K H C ICG +F GQALGGHMRRHR
Sbjct: 63 KKLINSDNPSLLGSLSNKKTKTSHPCPICGVKFPMGQALGGHMRRHR 109
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/28 (75%), Positives = 22/28 (78%)
Query: 76 EFVYECKTCSKCFPSFQALGGHRTSHKK 103
E V+ CKTC K F SFQALGGHR SHKK
Sbjct: 37 ERVFRCKTCLKEFSSFQALGGHRASHKK 64
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.135 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,262,423
Number of extensions: 121700
Number of successful extensions: 514
Number of sequences better than 1.0e-05: 13
Number of HSP's gapped: 510
Number of HSP's successfully gapped: 22
Length of query: 289
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 191
Effective length of database: 8,419,801
Effective search space: 1608181991
Effective search space used: 1608181991
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 111 (47.4 bits)