Os04g0111200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP sulfurylase (Fragment).
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Os04g0111200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP sulfurylase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.78 | 0.375 | 14.1 | -0.565 | 1.14 | -0.604 | -0.0507 | 2.69 | 0.0165 | 6.33 | 18.1 | 19 | -- | -- |
| 70.12 | 0.39 | 14.2 | -0.976 | 1.1 | -0.589 | -0.748 | -- | -0.11 | 5.48 | 11.86 | 581 | -- | -- |
| 63.78 | 0.375 | 14.1 | -0.575 | 1.15 | -0.61 | -- | 2.63 | 0.0134 | 6.36 | 18.1 | 18 | -- | -- |
| 71.19 | 0.396 | 14.2 | -1 | 1.14 | -0.577 | -- | -- | -0.11 | 6.31 | 15.24 | 42 | -- | -- |
| 107.12 | 0.482 | 14.1 | -0.154 | -- | -1.43 | -- | 3.34 | 0.224 | -- | 20.33 | 341 | -- | -- |
| 74.02 | 0.403 | 14.2 | -1.11 | 1.24 | -- | -0.523 | -- | -0.196 | 5.75 | -- | -- | -- | -- |
| 74.63 | 0.405 | 14.2 | -1.12 | 1.23 | -- | -- | -- | -0.193 | 5.85 | -- | -- | -- | -- |
| 114.61 | 0.499 | 14.2 | -0.765 | -- | -1.36 | -- | -- | 0.0536 | -- | 17.89 | 360 | -- | -- |
| 94.29 | 0.452 | 14.1 | -- | 1 | -0.986 | -- | -- | 0.0538 | 5.47 | 13.95 | 614 | -- | -- |
| 153.51 | 0.579 | 14.2 | -1.08 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 107.4 | 0.485 | 14.2 | -- | 1.22 | -- | -- | -- | -0.0692 | 5.9 | -- | -- | -- | -- |
| 128.81 | 0.529 | 14.1 | -- | -- | -1.65 | -- | -- | 0.178 | -- | 16.88 | 373 | -- | -- |
| 184.14 | 0.633 | 14.2 | -- | -- | -- | -- | -- | -0.0451 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 4 | 58.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 16 |
| 11 | 59.19 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 24 | 59.80 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 14 |
| 42 | 60.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 47 | 60.20 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 51 | 60.32 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 123 | 60.88 | temperature | 10 | 90 | > th | dose dependent | rect. | 5 | 16 |
| 136 | 60.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 5 |
| 143 | 61.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 178 | 61.18 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 192 | 61.27 | radiation | 1 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 295 | 61.80 | radiation | 20 | 720 | < th | dose independent | sin | 12 | NA |
| 297 | 61.80 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 16 |
| 315 | 61.88 | radiation | 10 | 720 | < th | dose dependent | rect. | 3 | 14 |
| 329 | 61.91 | temperature | 20 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 347 | 61.96 | radiation | 10 | 720 | < th | dose independent | rect. | 3 | 14 |
| 378 | 62.10 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 397 | 62.17 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 401 | 62.19 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 408 | 62.21 | temperature | 20 | 270 | > th | dose independent | rect. | 23 | 20 |
| 436 | 62.29 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 18 |
| 439 | 62.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 442 | 62.30 | radiation | 1 | 720 | > th | dose dependent | rect. | 15 | 16 |
| 494 | 62.43 | temperature | 20 | 1440 | < th | dose independent | sin | 8 | NA |
| 528 | 62.50 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 557 | 62.56 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 565 | 62.56 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 567 | 62.57 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 585 | 62.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 586 | 62.61 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 596 | 62.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 602 | 62.65 | wind | 9 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 628 | 62.69 | radiation | 10 | 720 | < th | dose dependent | rect. | 23 | 18 |
| 652 | 62.72 | radiation | 1 | 720 | > th | dose dependent | sin | 13 | NA |
| 653 | 62.72 | radiation | 40 | 720 | < th | dose dependent | sin | 12 | NA |
| 671 | 62.75 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 709 | 62.78 | radiation | 1 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 726 | 62.80 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 11 | 16 |
| 733 | 62.81 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 12 | 21 |
| 752 | 62.83 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 10 | 20 |
| 782 | 62.87 | humidity | 90 | 270 | < th | dose independent | rect. | 20 | 10 |
| 802 | 62.89 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 812 | 62.91 | atmosphere | 995 | 43200 | < th | dose independent | sin | 5 | NA |
| 835 | 62.93 | radiation | 1 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 880 | 62.96 | radiation | 10 | 720 | < th | dose dependent | rect. | 21 | 20 |
| 887 | 62.97 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 897 | 62.98 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 928 | 63.00 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 938 | 63.01 | radiation | 30 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 974 | 63.04 | wind | 9 | 43200 | < th | dose independent | sin | 1 | NA |
| 988 | 63.05 | wind | 9 | 43200 | > th | dose independent | sin | 1 | NA |