BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0111200 Os04g0111200|AK105831
(225 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0111200 Similar to ATP sulfurylase (Fragment) 466 e-132
Os03g0743900 Similar to ATP sulfurylase 396 e-111
>Os04g0111200 Similar to ATP sulfurylase (Fragment)
Length = 225
Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust.
Identities = 225/225 (100%), Positives = 225/225 (100%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP
Sbjct: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI
Sbjct: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSLQTEEAAVATV 225
SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSLQTEEAAVATV
Sbjct: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSLQTEEAAVATV 225
>Os03g0743900 Similar to ATP sulfurylase
Length = 477
Score = 396 bits (1018), Expect = e-111, Method: Compositional matrix adjust.
Identities = 184/215 (85%), Positives = 200/215 (93%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
F +R ADAVFAFQLRNPVHNGHALLM DTR+RLLEMG+KNP+LLLHPLGGFTKADDVPL
Sbjct: 248 FARRNADAVFAFQLRNPVHNGHALLMTDTRKRLLEMGYKNPVLLLHPLGGFTKADDVPLS 307
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
RM+QH KVLE+GVL+PE+T+V+IFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 308 WRMKQHEKVLEEGVLNPESTVVAIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 367
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHPTEKRDLY+ DHGKKVLSMAPGLEKLNILPFKVAAYDT KKM FFDPSR DFLFI
Sbjct: 368 MGHPTEKRDLYDADHGKKVLSMAPGLEKLNILPFKVAAYDTKQKKMDFFDPSRKDDFLFI 427
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSL 215
SGTKMR AK+ ++PPDGFMCPGGWKVLV+YY+SL
Sbjct: 428 SGTKMRTLAKNCQSPPDGFMCPGGWKVLVEYYDSL 462
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,556,724
Number of extensions: 379276
Number of successful extensions: 623
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 623
Number of HSP's successfully gapped: 2
Length of query: 225
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 128
Effective length of database: 11,971,043
Effective search space: 1532293504
Effective search space used: 1532293504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)