BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0111200 Os04g0111200|AK105831
(225 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G19920.1 | chr1:6914835-6916657 REVERSE LENGTH=477 426 e-120
AT4G14680.1 | chr4:8413443-8415311 REVERSE LENGTH=466 405 e-114
AT5G43780.1 | chr5:17589631-17591480 REVERSE LENGTH=470 405 e-113
AT3G22890.1 | chr3:8112837-8114734 FORWARD LENGTH=464 403 e-113
>AT1G19920.1 | chr1:6914835-6916657 REVERSE LENGTH=477
Length = 476
Score = 426 bits (1096), Expect = e-120, Method: Compositional matrix adjust.
Identities = 197/225 (87%), Positives = 210/225 (93%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
FD R ADAVFAFQLRNPVHNGHALLMNDTR+RLLEMG+KNP+LLLHPLGGFTKADDVPL
Sbjct: 249 FDNRQADAVFAFQLRNPVHNGHALLMNDTRKRLLEMGYKNPVLLLHPLGGFTKADDVPLD 308
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
VRMEQHSKVLEDGVLDP+TTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 309 VRMEQHSKVLEDGVLDPKTTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 368
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHPTEKRDLY+PDHGK+VLSMAPGLEKLNILPF+VAAYDT+ KKMAFFDPSR+K+FLFI
Sbjct: 369 MGHPTEKRDLYDPDHGKRVLSMAPGLEKLNILPFRVAAYDTIEKKMAFFDPSRAKEFLFI 428
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSLQTEEAAVATV 225
SGTKMR +A++GENPPDGFMCP GW VLV YY SLQ EA V
Sbjct: 429 SGTKMRTYARTGENPPDGFMCPSGWNVLVKYYESLQESEAKQQAV 473
>AT4G14680.1 | chr4:8413443-8415311 REVERSE LENGTH=466
Length = 465
Score = 405 bits (1041), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/215 (88%), Positives = 201/215 (93%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
+KRGADAVFAFQLRNPVHNGHALLM DTRRRLLEMG+KNPILLLHPLGGFTKADDVPL
Sbjct: 237 LEKRGADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLS 296
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
RM+QH KVLEDGVLDPETT+VSIFPSPM YAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 297 WRMKQHEKVLEDGVLDPETTVVSIFPSPMLYAGPTEVQWHAKARINAGANFYIVGRDPAG 356
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHP EKRDLY+ DHGKKVLSMAPGLE+LNILPF+VAAYD KMAFFDPSR++DFLFI
Sbjct: 357 MGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRAQDFLFI 416
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSL 215
SGTKMRA AK+ ENPPDGFMCPGGWKVLVDYY+SL
Sbjct: 417 SGTKMRALAKNRENPPDGFMCPGGWKVLVDYYDSL 451
>AT5G43780.1 | chr5:17589631-17591480 REVERSE LENGTH=470
Length = 469
Score = 405 bits (1040), Expect = e-113, Method: Compositional matrix adjust.
Identities = 190/218 (87%), Positives = 199/218 (91%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
F +RGADAVFAFQLRNPVHNGHALLM DTRRRLLEMG+KNP+LLL+PLGGFTKADDVPL
Sbjct: 239 FIRRGADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPVLLLNPLGGFTKADDVPLS 298
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
RM QH KVLEDGVLDPETT+VSIFPSPM YAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 299 WRMRQHEKVLEDGVLDPETTVVSIFPSPMLYAGPTEVQWHAKARINAGANFYIVGRDPAG 358
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHPTEKRDLY+ DHGKKVLSMAPGLE+LNILPFKVAAYD KMAFFDPSRS+DFLFI
Sbjct: 359 MGHPTEKRDLYDADHGKKVLSMAPGLERLNILPFKVAAYDKTQGKMAFFDPSRSQDFLFI 418
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSLQTE 218
SGTKMR AK ENPPDGFMCP GWKVLVDYY+SL E
Sbjct: 419 SGTKMRGLAKKKENPPDGFMCPSGWKVLVDYYDSLSAE 456
>AT3G22890.1 | chr3:8112837-8114734 FORWARD LENGTH=464
Length = 463
Score = 403 bits (1035), Expect = e-113, Method: Compositional matrix adjust.
Identities = 189/215 (87%), Positives = 198/215 (92%)
Query: 1 FDKRGADAVFAFQLRNPVHNGHALLMNDTRRRLLEMGFKNPILLLHPLGGFTKADDVPLP 60
+KR ADAVFAFQLRNPVHNGHALLM DTRRRLLEMG+KNPILLLHPLGGFTKADDVPL
Sbjct: 235 LEKRNADAVFAFQLRNPVHNGHALLMTDTRRRLLEMGYKNPILLLHPLGGFTKADDVPLD 294
Query: 61 VRMEQHSKVLEDGVLDPETTIVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 120
RM+QH KVLEDGVLDPETT+VSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG
Sbjct: 295 WRMKQHEKVLEDGVLDPETTVVSIFPSPMHYAGPTEVQWHAKARINAGANFYIVGRDPAG 354
Query: 121 MGHPTEKRDLYNPDHGKKVLSMAPGLEKLNILPFKVAAYDTVAKKMAFFDPSRSKDFLFI 180
MGHP EKRDLY+ DHGKKVLSMAPGLE+LNILPF+VAAYD KMAFFDPSR +DFLFI
Sbjct: 355 MGHPVEKRDLYDADHGKKVLSMAPGLERLNILPFRVAAYDKTQGKMAFFDPSRPQDFLFI 414
Query: 181 SGTKMRAFAKSGENPPDGFMCPGGWKVLVDYYNSL 215
SGTKMR AK+ ENPPDGFMCPGGWKVLVDYY SL
Sbjct: 415 SGTKMRTLAKNNENPPDGFMCPGGWKVLVDYYESL 449
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.138 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,357,368
Number of extensions: 234453
Number of successful extensions: 438
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 438
Number of HSP's successfully gapped: 4
Length of query: 225
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 130
Effective length of database: 8,502,049
Effective search space: 1105266370
Effective search space used: 1105266370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)