Os04g0102600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0102600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Splicing factor 3B subunit 2 (Spliceosome associated protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing factor SF3b 145 kDa subunit).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.38 | 0.25 | 11.6 | -0.2 | 0.0812 | -1.26 | 0.59 | 0.18 | -0.79 | 1.2 | 31.21 | 228 | -- | -- |
| 28.4 | 0.248 | 11.6 | -0.178 | 0.0922 | -1.28 | 0.637 | -- | -0.79 | 1.29 | 31.09 | 222 | -- | -- |
| 29.61 | 0.253 | 11.6 | -0.283 | 0.0704 | -1.24 | -- | 0.618 | -0.808 | 0.734 | 31.27 | 228 | -- | -- |
| 29.99 | 0.255 | 11.6 | -0.19 | 0.0789 | -1.24 | -- | -- | -0.788 | 1 | 30.85 | 229 | -- | -- |
| 29.85 | 0.254 | 11.6 | -0.281 | -- | -1.22 | -- | 0.592 | -0.796 | -- | 31.49 | 256 | -- | -- |
| 49.02 | 0.328 | 11.6 | 0.117 | 0.337 | -- | -0.348 | -- | -0.559 | 16.5 | -- | -- | -- | -- |
| 49.28 | 0.329 | 11.6 | 0.114 | 0.339 | -- | -- | -- | -0.561 | 16.9 | -- | -- | -- | -- |
| 30.2 | 0.256 | 11.6 | -0.172 | -- | -1.2 | -- | -- | -0.779 | -- | 30.97 | 265 | -- | -- |
| 30.82 | 0.259 | 11.6 | -- | 0.0741 | -1.16 | -- | -- | -0.75 | 23.5 | 30.93 | 220 | -- | -- |
| 55.35 | 0.348 | 11.6 | 0.101 | -- | -- | -- | -- | -0.57 | -- | -- | -- | -- | -- |
| 49.62 | 0.33 | 11.6 | -- | 0.337 | -- | -- | -- | -0.573 | 16.9 | -- | -- | -- | -- |
| 30.94 | 0.259 | 11.6 | -- | -- | -1.15 | -- | -- | -0.748 | -- | 31.11 | 263 | -- | -- |
| 55.62 | 0.348 | 11.6 | -- | -- | -- | -- | -- | -0.581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.38 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 4 | 27.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 5 |
| 9 | 27.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 7 |
| 15 | 27.42 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 16 | 27.42 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 44 | 27.52 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 45 | 27.52 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 150 | 27.80 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 198 | 27.90 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 218 | 27.97 | temperature | 15 | 4320 | > th | dose dependent | sin | 12 | NA |
| 220 | 27.97 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 269 | 28.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 315 | 28.10 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 495 | 28.42 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 676 | 28.63 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 691 | 28.65 | temperature | 15 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 744 | 28.70 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 808 | 28.76 | temperature | 30 | 4320 | < th | dose dependent | rect. | 3 | 1 |