BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0102600 Os04g0102600|AK070814
(206 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31140.1 | chr2:13270088-13271619 FORWARD LENGTH=206 262 8e-71
AT1G06200.1 | chr1:1894604-1896852 REVERSE LENGTH=207 258 2e-69
>AT2G31140.1 | chr2:13270088-13271619 FORWARD LENGTH=206
Length = 205
Score = 262 bits (670), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 124/205 (60%), Positives = 155/205 (75%), Gaps = 1/205 (0%)
Query: 1 MVSLSTWFRYAAHKFEYSISLSWKKYNVGQINSTQLTDAVWKNFFQGKLTYMHWNKGGEA 60
M S+STWFRY AHK EYS++LS K + +++ +L + KN F GK+TY+H +KG E
Sbjct: 1 MASISTWFRYMAHKLEYSLTLSLKSHRSNKLSDRELIQIICKNLFYGKITYLHSDKGPE- 59
Query: 61 MAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDE 120
M+P + TLL+RK+ + VF+GD V+LKDP SD +VRRLAA+EG+EMVS DE
Sbjct: 60 MSPTMTANENTLLIRKIPIANTRFVFIGDAVVLKDPNDSDKYLVRRLAAVEGFEMVSGDE 119
Query: 121 KDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENS 180
K+EPFVL+K+QCWV A+NQ LK KEA DSR FGPV DI+GR IY LRTAVDHGPV NS
Sbjct: 120 KEEPFVLEKNQCWVTAENQELKAKEAYDSRTFGPVSTADIVGRAIYCLRTAVDHGPVRNS 179
Query: 181 RMAMNQDSPVLAVELDVEEMAKNNK 205
+ AM QDSP+LAVELDV+EMAKN+K
Sbjct: 180 QTAMGQDSPILAVELDVDEMAKNHK 204
>AT1G06200.1 | chr1:1894604-1896852 REVERSE LENGTH=207
Length = 206
Score = 258 bits (658), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 122/205 (59%), Positives = 156/205 (76%), Gaps = 1/205 (0%)
Query: 1 MVSLSTWFRYAAHKFEYSISLSWKKYNVGQINSTQLTDAVWKNFFQGKLTYMHWNKGGEA 60
M S++ + RY AHK EYS++LS KK+ +++ +L V KN F G+++Y+H +KG E
Sbjct: 1 MASITNYVRYMAHKLEYSLTLSLKKHTREKLSDRELFGVVMKNLFYGRISYLHSDKGKE- 59
Query: 61 MAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDE 120
MAP T TLLVRKL + +FVGD V+LKDP +++ IVRRLAALEG EMVS+DE
Sbjct: 60 MAPTMGTNESTLLVRKLPVVDTRYIFVGDAVVLKDPNETNKYIVRRLAALEGSEMVSSDE 119
Query: 121 KDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENS 180
KDEPFVL+KDQCWV+A+NQ +K KEA DSR FGP+ M DI+GR IY LRTAVDHGPV NS
Sbjct: 120 KDEPFVLEKDQCWVVAENQEMKSKEAYDSRTFGPISMADIVGRAIYCLRTAVDHGPVSNS 179
Query: 181 RMAMNQDSPVLAVELDVEEMAKNNK 205
AM++DSP+LAVELDV+E+AK +K
Sbjct: 180 EFAMDEDSPILAVELDVDELAKGHK 204
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,609,733
Number of extensions: 190086
Number of successful extensions: 392
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 2
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)