BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0102600 Os04g0102600|AK070814
         (206 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0102600  Similar to Splicing factor 3B subunit 2 (Splic...   427   e-120

>Os04g0102600 Similar to Splicing factor 3B subunit 2 (Spliceosome associated
           protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing
           factor SF3b 145 kDa subunit)
          Length = 206

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 206/206 (100%), Positives = 206/206 (100%)

Query: 1   MVSLSTWFRYAAHKFEYSISLSWKKYNVGQINSTQLTDAVWKNFFQGKLTYMHWNKGGEA 60
           MVSLSTWFRYAAHKFEYSISLSWKKYNVGQINSTQLTDAVWKNFFQGKLTYMHWNKGGEA
Sbjct: 1   MVSLSTWFRYAAHKFEYSISLSWKKYNVGQINSTQLTDAVWKNFFQGKLTYMHWNKGGEA 60

Query: 61  MAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDE 120
           MAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDE
Sbjct: 61  MAPIESTTGGTLLVRKLVNLSPTQVFVGDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDE 120

Query: 121 KDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENS 180
           KDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENS
Sbjct: 121 KDEPFVLDKDQCWVLADNQSLKPKEARDSRLFGPVPMTDILGRVIYSLRTAVDHGPVENS 180

Query: 181 RMAMNQDSPVLAVELDVEEMAKNNKV 206
           RMAMNQDSPVLAVELDVEEMAKNNKV
Sbjct: 181 RMAMNQDSPVLAVELDVEEMAKNNKV 206



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,061,447
Number of extensions: 286160
Number of successful extensions: 595
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 598
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 110
Effective length of database: 12,023,257
Effective search space: 1322558270
Effective search space used: 1322558270
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 153 (63.5 bits)