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Os03g0850400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Aspartate kinase precursor (EC 2.7.2.4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.2 (0.0593) R2 : 0.781
β1 : -7.68 (0.219) R2dD : 0.625 R2D : 0.506
β2 : 0.963 (0.155) R2dC : 0.0197 R2C : 0.00835
β3 : 2.57 (0.165) R2dE : 0.12 R2E : 0.127
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 4.03 (0.635) R2dD*E : 0.0197 R2D*E : -0.0319
γ1 : -1.58 (0.126) R2dN8 : 0.108 R2N8 : 0.000108
σ : 1.11
deviance : 565.2
__
_____
C
peak time of C : 7.32
E
wheather : radiation
threshold : -24.15
memory length : 80
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.09
open length of G : 7.94

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
550.68 1.1 9.23 -7.67 0.976 2.58 -2.59 5.55 -1.68 8.01 -13.63 71 7.97 8.16
580.2 1.12 9.21 -7.71 0.984 3.15 -3.06 -- -1.55 4.39 -34.03 15 8.43 8.44
565.2 1.11 9.2 -7.68 0.963 2.57 -- 4.03 -1.58 7.32 -24.15 80 8.09 7.94
609.37 1.15 9.19 -7.42 0.909 3.02 -- -- -1.5 5.32 -34.01 12 8.53 8.38
603.7 1.14 9.24 -7.71 -- 2.77 -- 3.86 -1.65 -- -30.19 70 7.79 7.84
687.19 1.23 9.19 -7.62 2.21 -- 1.83 -- -1.62 11.2 -- -- -- --
700.89 1.24 9.18 -7.55 2.21 -- -- -- -1.62 11 -- -- -- --
645.07 1.18 9.23 -7.47 -- 2.61 -- -- -1.54 -- -40.67 11 8.42 8.37
2096.37 2.13 9 -- 0.828 2.89 -- -- -0.728 5 -59.56 9 8.58 8.33
1004.26 1.48 9.24 -7.6 -- -- -- -- -1.64 -- -- -- -- --
2202.42 2.2 8.99 -- 2.28 -- -- -- -0.779 11.3 -- -- -- --
2125.68 2.15 9.02 -- -- 2.5 -- -- -0.696 -- -77.25 9 8.32 8.37
2527.11 2.35 9.05 -- -- -- -- -- -0.794 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 559.55 atmosphere 1000.0 270 > th dose independent rect. 13 6
3 562.47 atmosphere 1000.0 270 > th dose independent rect. 15 3
4 564.00 radiation 1.0 90 > th dose dependent rect. 8 8
5 564.21 temperature 10.0 270 > th dose dependent rect. 15 3
11 566.34 wind 7.0 270 < th dose independent rect. 15 2
12 567.03 radiation 1.0 10 > th dose dependent rect. 8 8
14 567.60 temperature 10.0 270 > th dose dependent rect. 14 5
16 567.81 precipitation 0.1 270 < th dose independent rect. 17 22
17 567.81 precipitation 0.1 270 < th dose dependent rect. 17 22
18 567.87 atmosphere 995.0 270 > th dose dependent rect. 14 5
19 567.97 radiation 40.0 90 < th dose dependent rect. 23 22
20 568.13 atmosphere 995.0 270 > th dose dependent rect. 15 3
24 569.04 radiation 1.0 90 > th dose dependent rect. 4 12
50 569.44 radiation 1.0 10 > th dose dependent rect. 8 23
60 570.25 radiation 40.0 90 < th dose dependent rect. 15 20
66 571.01 humidity 50.0 270 > th dose independent rect. 17 22
68 571.13 humidity 50.0 270 > th dose independent rect. 8 15
81 571.22 radiation 40.0 10 < th dose dependent rect. 23 23
82 571.40 radiation 1.0 270 > th dose independent rect. 15 4
92 571.49 wind 1.0 270 > th dose independent rect. 15 2
94 571.66 wind 9.0 270 < th dose independent rect. 17 22
97 571.78 radiation 40.0 270 < th dose independent rect. 15 2
98 571.81 humidity 50.0 270 > th dose independent rect. 19 19
101 571.93 radiation 1.0 90 > th dose dependent sin 1 NA
104 572.19 precipitation 0.1 270 < th dose independent rect. 19 19
105 572.19 precipitation 0.1 270 < th dose dependent rect. 19 19
108 572.42 temperature 10.0 270 > th dose independent rect. 15 2
110 572.42 atmosphere 1010.0 270 < th dose independent rect. 15 2
112 572.42 temperature 10.0 270 > th dose independent rect. 17 22
120 572.99 radiation 1.0 270 > th dose independent rect. 15 2
131 573.13 humidity 50.0 10 > th dose independent rect. 20 20
133 573.20 atmosphere 995.0 270 > th dose independent rect. 14 16
142 573.42 radiation 30.0 10 < th dose independent rect. 24 20
145 573.63 precipitation 0.1 270 < th dose independent rect. 15 2
146 573.63 precipitation 0.1 270 < th dose dependent rect. 15 2
147 573.72 radiation 30.0 90 < th dose independent rect. 1 18
150 573.88 temperature 10.0 10 > th dose dependent rect. 8 8
151 573.90 radiation 30.0 90 < th dose independent rect. 15 20
157 573.99 temperature 10.0 90 > th dose dependent rect. 8 8
163 574.22 radiation 30.0 90 < th dose independent rect. 23 21
171 574.62 precipitation 0.1 90 < th dose independent rect. 8 8
172 574.62 precipitation 0.1 90 < th dose dependent rect. 8 8
174 574.81 radiation 1.0 270 > th dose independent sin 15 NA
175 574.83 temperature 15.0 90 > th dose independent rect. 8 8
176 574.85 radiation 40.0 10 < th dose dependent rect. 13 23
178 574.93 humidity 50.0 10 > th dose independent rect. 8 8
179 574.96 radiation 30.0 90 < th dose independent rect. 16 17
181 575.14 wind 9.0 270 < th dose independent rect. 19 19
184 575.32 radiation 30.0 10 < th dose independent rect. 2 18
186 575.40 radiation 30.0 90 < th dose independent rect. 3 16
187 575.42 wind 1.0 270 > th dose independent rect. 14 5
188 575.45 humidity 50.0 270 > th dose independent rect. 7 7
189 575.51 radiation 1.0 10 > th dose dependent sin 22 NA
194 575.63 atmosphere 1015.0 90 < th dose independent rect. 8 8
195 575.63 temperature 10.0 90 > th dose independent rect. 16 16
196 575.63 temperature 15.0 270 > th dose independent rect. 19 19
198 575.70 temperature 25.0 270 > th dose independent rect. 15 2
200 575.73 radiation 1.0 90 > th dose dependent rect. 8 23
202 575.88 temperature 10.0 270 > th dose independent rect. 14 5
204 575.88 atmosphere 1010.0 270 < th dose independent rect. 14 5
207 575.88 atmosphere 995.0 270 > th dose independent rect. 19 19
219 576.01 wind 7.0 90 < th dose independent rect. 16 16
230 576.19 temperature 10.0 10 > th dose dependent rect. 16 4
231 576.23 wind 1.0 90 > th dose independent rect. 8 8
242 576.55 radiation 40.0 90 < th dose dependent rect. 15 18
259 576.69 radiation 40.0 90 < th dose dependent rect. 1 18
261 576.73 humidity 90.0 90 < th dose independent rect. 8 8
263 576.77 radiation 40.0 10 < th dose dependent rect. 11 9
266 576.92 temperature 15.0 270 > th dose independent rect. 6 8
268 577.02 precipitation 0.1 270 < th dose independent rect. 14 5
269 577.02 temperature 20.0 10 > th dose independent rect. 8 8
270 577.02 precipitation 0.1 270 < th dose dependent rect. 14 5
271 577.03 temperature 10.0 10 > th dose independent rect. 8 8
273 577.03 atmosphere 1015.0 10 < th dose independent rect. 8 8
274 577.03 precipitation 0.1 10 < th dose independent rect. 8 8
275 577.03 temperature 10.0 10 > th dose independent rect. 16 16
276 577.03 precipitation 0.1 10 < th dose dependent rect. 8 8
277 577.11 radiation 40.0 90 < th dose dependent rect. 21 23
278 577.15 wind 9.0 90 < th dose independent rect. 8 8
280 577.18 radiation 40.0 10 < th dose independent rect. 16 16
281 577.19 precipitation 0.1 270 < th dose independent rect. 6 8
282 577.19 precipitation 0.1 270 < th dose dependent rect. 6 8
291 577.32 wind 1.0 10 > th dose independent rect. 9 7
296 577.42 wind 7.0 270 < th dose independent rect. 14 16
298 577.46 wind 9.0 10 < th dose independent rect. 16 16
299 577.48 radiation 40.0 10 < th dose dependent rect. 11 23
302 577.55 atmosphere 995.0 90 > th dose independent rect. 16 16
327 578.02 atmosphere 995.0 270 > th dose independent rect. 6 8
328 578.02 atmosphere 1015.0 270 < th dose independent rect. 6 8
329 578.02 temperature 10.0 270 > th dose independent rect. 14 16
333 578.12 radiation 1.0 90 > th dose independent rect. 8 8
339 578.21 wind 9.0 270 < th dose independent rect. 6 8
359 578.58 radiation 40.0 90 < th dose dependent rect. 5 14
360 578.59 radiation 40.0 10 < th dose dependent no NA NA
370 578.75 radiation 40.0 90 < th dose dependent rect. 3 16
375 578.97 wind 9.0 10 < th dose independent rect. 8 8
406 579.26 radiation 40.0 90 < th dose dependent rect. 15 4
436 579.52 precipitation 0.1 10 < th dose independent rect. 20 20
437 579.52 precipitation 0.1 10 < th dose dependent rect. 20 20
440 579.54 atmosphere 995.0 10 > th dose independent rect. 16 16
441 579.55 atmosphere 1000.0 10 > th dose independent rect. 16 4
449 579.66 radiation 40.0 10 < th dose dependent rect. 7 13
450 579.70 radiation 1.0 10 > th dose dependent rect. 5 11
470 579.79 radiation 20.0 270 < th dose independent rect. 23 9
479 579.94 wind 7.0 10 < th dose independent rect. 16 4
514 580.26 temperature 10.0 270 > th dose dependent rect. 6 8
525 580.57 wind 9.0 90 < th dose dependent rect. 16 3
533 580.76 atmosphere 995.0 270 > th dose independent rect. 18 21
549 580.89 radiation 40.0 10 < th dose dependent rect. 14 6
553 580.98 atmosphere 995.0 10 > th dose independent rect. 8 8
570 581.34 radiation 1.0 270 > th dose independent rect. 6 8
588 581.63 radiation 40.0 10 < th dose dependent rect. 24 20
622 581.88 radiation 30.0 90 < th dose independent rect. 13 22
626 581.96 radiation 1.0 10 > th dose dependent no NA NA
732 582.23 precipitation 0.1 270 < th dose independent rect. 8 15
733 582.23 precipitation 0.1 270 < th dose dependent rect. 8 15
771 582.41 radiation 40.0 270 < th dose independent rect. 11 8
776 582.45 wind 9.0 90 < th dose dependent rect. 15 5
784 582.57 radiation 1.0 90 > th dose dependent no NA NA
841 582.60 temperature 15.0 270 > th dose independent rect. 8 15
871 582.84 radiation 1.0 270 > th dose dependent rect. 16 3
881 582.87 atmosphere 995.0 10 > th dose dependent rect. 16 4
885 582.95 radiation 40.0 270 < th dose dependent rect. 23 10
887 583.01 radiation 30.0 90 < th dose independent rect. 1 10
908 583.10 wind 7.0 270 < th dose independent rect. 23 9
921 583.20 temperature 10.0 90 > th dose dependent rect. 20 19
937 583.47 temperature 10.0 270 > th dose independent rect. 23 9
938 583.47 temperature 30.0 270 < th dose independent rect. 23 9
939 583.47 humidity 50.0 270 > th dose independent rect. 23 9
941 583.47 atmosphere 995.0 270 > th dose independent rect. 23 9
953 583.56 wind 9.0 10 < th dose independent rect. 20 20
967 583.76 wind 1.0 10 > th dose independent rect. 16 4
972 583.81 wind 9.0 270 < th dose independent rect. 8 15
976 583.85 radiation 30.0 10 < th dose independent rect. 5 15
992 584.10 temperature 10.0 10 > th dose independent rect. 16 4
994 584.10 atmosphere 1010.0 10 < th dose independent rect. 16 4
996 584.10 radiation 40.0 10 < th dose independent rect. 16 4
998 584.10 temperature 10.0 10 > th dose independent rect. 20 20