Os03g0840900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF543 family protein.
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Os03g0840900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF543 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.58 | 0.276 | 10 | -0.227 | 0.454 | 0.853 | -0.217 | 1.13 | -0.351 | 8.71 | 23.47 | 94 | -- | -- |
| 35.23 | 0.276 | 10 | -0.373 | 0.491 | 0.977 | -0.179 | -- | -0.382 | 8.43 | 23.96 | 118 | -- | -- |
| 34.67 | 0.274 | 10 | -0.234 | 0.472 | 0.857 | -- | 1.17 | -0.35 | 8.77 | 23.21 | 118 | -- | -- |
| 35.32 | 0.277 | 10 | -0.395 | 0.484 | 0.959 | -- | -- | -0.389 | 8.64 | 23.85 | 121 | -- | -- |
| 42.34 | 0.303 | 10 | -0.281 | -- | 0.952 | -- | 0.898 | -0.391 | -- | 21.66 | 2 | -- | -- |
| 49.9 | 0.331 | 10 | -0.237 | 0.526 | -- | 0.346 | -- | -0.272 | 12 | -- | -- | -- | -- |
| 50.38 | 0.332 | 10 | -0.224 | 0.525 | -- | -- | -- | -0.271 | 11.8 | -- | -- | -- | -- |
| 43.02 | 0.305 | 10.1 | -0.425 | -- | 1 | -- | -- | -0.432 | -- | 21.95 | 2 | -- | -- |
| 39.12 | 0.291 | 10 | -- | 0.477 | 0.861 | -- | -- | -0.309 | 9.03 | 24.68 | 121 | -- | -- |
| 67.74 | 0.385 | 10 | -0.24 | -- | -- | -- | -- | -0.278 | -- | -- | -- | -- | -- |
| 51.7 | 0.336 | 10 | -- | 0.528 | -- | -- | -- | -0.246 | 11.8 | -- | -- | -- | -- |
| 47.54 | 0.322 | 10 | -- | -- | 0.922 | -- | -- | -0.317 | -- | 24.68 | 121 | -- | -- |
| 69.25 | 0.388 | 10 | -- | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.11 | temperature | 30 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 3 | 33.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 4 | 33.12 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 7 | 33.14 | temperature | 30 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 10 | 33.16 | temperature | 30 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 11 | 33.16 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 17 | 33.59 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 46 | 33.82 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 62 | 33.91 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 115 | 34.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 16 |
| 123 | 34.49 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 131 | 34.58 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 140 | 34.59 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 9 |
| 164 | 34.61 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 185 | 34.69 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 220 | 34.78 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 252 | 34.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 260 | 34.85 | temperature | 10 | 720 | > th | dose dependent | sin | 2 | NA |
| 273 | 34.86 | temperature | 15 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 288 | 34.89 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 320 | 34.94 | temperature | 30 | 4320 | < th | dose independent | sin | 7 | NA |
| 371 | 34.98 | radiation | 20 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 380 | 34.99 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 397 | 35.02 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 21 |
| 400 | 35.03 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 21 |
| 405 | 35.04 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 430 | 35.07 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 496 | 35.13 | temperature | 30 | 14400 | > th | dose independent | sin | 10 | NA |
| 509 | 35.14 | temperature | 30 | 4320 | > th | dose independent | sin | 7 | NA |
| 558 | 35.19 | temperature | 30 | 14400 | < th | dose independent | sin | 10 | NA |
| 636 | 35.24 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 642 | 35.25 | radiation | 20 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 650 | 35.26 | temperature | 30 | 14400 | > th | dose dependent | sin | 9 | NA |
| 671 | 35.28 | temperature | 25 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 804 | 35.39 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 813 | 35.40 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 835 | 35.40 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 842 | 35.41 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 18 |
| 907 | 35.45 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 912 | 35.45 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 920 | 35.45 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 940 | 35.47 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 1 |