BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0840900 Os03g0840900|J080063E22
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72170.1  | chr1:27156403-27157516 FORWARD LENGTH=103           63   4e-11
AT1G22520.2  | chr1:7952996-7954304 REVERSE LENGTH=180             53   4e-08

>AT1G72170.1 | chr1:27156403-27157516 FORWARD LENGTH=103
          Length = 102

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 36/70 (51%)

Query: 34  KSGIPPRYDLDAKWDACLDISIRRVAYSXXXXXXXXXXXXRSPTTRWXXXXXXXXXXXXX 93
           K  +PP YD++AKWDACLD+++RR  YS            RSP TRW             
Sbjct: 5   KDSVPPEYDVNAKWDACLDLTVRRFVYSSLGGAFAGLLFFRSPVTRWASIALGAGIGIGS 64

Query: 94  XYTECSYLFN 103
            Y++CS  F+
Sbjct: 65  AYSDCSRAFD 74



>AT1G22520.2 | chr1:7952996-7954304 REVERSE LENGTH=180
          Length = 179

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 32/64 (50%)

Query: 42  DLDAKWDACLDISIRRVAYSXXXXXXXXXXXXRSPTTRWXXXXXXXXXXXXXXYTECSYL 101
           D++AKWDACLD++ RR  YS            RSP TRW              YT+CS +
Sbjct: 12  DVNAKWDACLDLTARRFVYSSLGGAFAGLLFFRSPVTRWASIAFGAGIGIGSAYTDCSRV 71

Query: 102 FNGA 105
           F+ +
Sbjct: 72  FDAS 75



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.312    0.129    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,883,939
Number of extensions: 41900
Number of successful extensions: 44
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)