Os03g0838500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0838500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor I9, subtilisin propeptide domain containing protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.11	(0.0398)	R²	:	0.537
β₁	:	2.13	(0.167)	R²_dD	:	0.242	R²_D	:	0.385
β₂	:	0.833	(0.0965)	R²_dC	:	0.0782	R²_C	:	0.0846
β₃	:	-0.498	(0.118)	R²_dE	:	0.0265	R²_E	:	0.00804
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	6	(0.867)	R²_dD*E	:	0.072	R²_D*E	:	0.173
γ₁	:	-0.0489	(0.0838)	R²_dN8	:	0.000313	R²_N8	:	0.00263
σ	:	0.712
deviance	:	233.8
__

_____

C
peak time of C	:	8.28
E
wheather	:	temperature
threshold	:	29.6
memory length	:	4
response mode	:	< th
dose dependency	:	dose independent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
234.84	0.72	5.11	2.13	0.848	-0.554	0.996	6.76	0.0113	8.73	29.87	10	--	--
250.63	0.743	5.04	2.69	0.892	-0.213	0.903	--	0.0832	8.18	28.49	7	--	--
233.8	0.712	5.11	2.13	0.833	-0.498	--	6	-0.0489	8.28	29.6	4	--	--
252.97	0.741	5.04	2.71	0.893	-0.217	--	--	0.0795	8.18	28.6	16	--	--
272.83	0.769	5.14	2.1	--	-0.528	--	6.11	-0.0434	--	29.6	4	--	--
253.08	0.746	5.04	2.74	0.884	--	0.837	--	0.0964	8.72	--	--	--	--
255.4	0.748	5.04	2.77	0.882	--	--	--	0.0966	8.72	--	--	--	--
296.78	0.806	5.06	2.73	--	-0.188	--	--	0.0943	--	28.6	16	--	--
442.48	0.985	5.11	--	0.958	-0.516	--	--	-0.232	7.26	28.6	16	--	--
299.43	0.809	5.06	2.77	--	--	--	--	0.104	--	--	--	--	--
457.39	1	5.11	--	0.891	--	--	--	-0.212	8.49	--	--	--	--
490.05	1.03	5.13	--	--	-0.393	--	--	-0.214	--	28.6	16	--	--
501.82	1.05	5.13	--	--	--	--	--	-0.204	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	230.66	atmosphere	995.0	30	> th	dose dependent	rect.	2	10
3	231.55	humidity	60.0	30	> th	dose independent	rect.	12	14
4	231.88	temperature	10.0	1440	> th	dose independent	rect.	3	10
7	231.88	atmosphere	995.0	1440	> th	dose independent	rect.	3	10
8	231.88	temperature	10.0	1440	> th	dose independent	rect.	13	14
11	232.11	temperature	10.0	30	> th	dose independent	rect.	2	10
13	232.11	atmosphere	995.0	30	> th	dose independent	rect.	2	10
14	232.11	atmosphere	1015.0	30	< th	dose independent	rect.	2	10
15	232.11	temperature	10.0	30	> th	dose independent	rect.	12	14
16	232.28	precipitation	0.1	30	< th	dose independent	rect.	12	14
17	232.28	precipitation	0.1	30	< th	dose dependent	rect.	12	14
18	232.37	precipitation	0.1	30	< th	dose independent	rect.	2	10
19	232.37	precipitation	0.1	30	< th	dose dependent	rect.	2	10
21	232.55	temperature	20.0	720	> th	dose dependent	rect.	3	5
23	232.62	wind	9.0	30	< th	dose independent	rect.	2	10
24	232.66	wind	9.0	30	< th	dose independent	rect.	12	14
25	232.75	atmosphere	995.0	30	> th	dose independent	rect.	12	14
34	232.91	humidity	50.0	30	> th	dose independent	rect.	2	10
35	233.00	temperature	20.0	720	> th	dose dependent	rect.	4	3
50	234.07	atmosphere	1010.0	30	< th	dose independent	rect.	12	14
57	234.88	temperature	25.0	270	> th	dose independent	rect.	14	15
66	235.19	atmosphere	1005.0	14400	< th	dose independent	rect.	22	1
69	235.33	temperature	30.0	10	< th	dose independent	rect.	2	10
73	235.53	temperature	30.0	10	> th	dose independent	rect.	12	2
80	235.65	atmosphere	1005.0	14400	> th	dose independent	rect.	22	1
97	236.14	temperature	30.0	90	> th	dose independent	rect.	12	1
118	236.59	temperature	25.0	10	> th	dose dependent	rect.	16	23
120	236.62	temperature	25.0	270	> th	dose dependent	rect.	3	10
125	236.70	temperature	30.0	10	< th	dose independent	sin	3	NA
131	236.77	temperature	30.0	10	< th	dose independent	no	NA	NA
143	236.97	temperature	25.0	720	> th	dose independent	rect.	4	4
161	237.14	temperature	25.0	270	> th	dose dependent	rect.	10	1
168	237.22	temperature	25.0	720	> th	dose independent	rect.	3	6
175	237.27	atmosphere	995.0	14400	> th	dose independent	rect.	18	1
186	237.42	temperature	30.0	30	< th	dose independent	rect.	12	14
188	237.45	temperature	25.0	10	> th	dose dependent	rect.	24	15
189	237.46	wind	9.0	4320	> th	dose dependent	rect.	13	8
197	237.54	temperature	30.0	10	< th	dose independent	rect.	11	23
202	237.56	temperature	25.0	10	> th	dose dependent	rect.	12	1
204	237.57	wind	3.0	90	> th	dose dependent	rect.	12	1
207	237.60	temperature	25.0	10	> th	dose dependent	rect.	5	10
224	237.68	wind	3.0	90	> th	dose independent	rect.	12	1
225	237.68	wind	9.0	4320	> th	dose dependent	rect.	13	11
228	237.69	wind	1.0	10	> th	dose independent	rect.	12	14
230	237.71	temperature	25.0	90	> th	dose dependent	rect.	23	15
242	237.77	temperature	25.0	270	> th	dose independent	sin	14	NA
250	237.82	wind	7.0	4320	> th	dose dependent	rect.	15	6
256	237.87	temperature	25.0	90	> th	dose dependent	rect.	10	4
260	237.89	temperature	25.0	10	> th	dose dependent	rect.	21	18
266	237.92	wind	9.0	4320	< th	dose independent	rect.	15	6
268	237.94	atmosphere	995.0	14400	> th	dose independent	rect.	13	2
292	237.98	atmosphere	995.0	14400	> th	dose independent	rect.	13	6
340	238.20	wind	9.0	4320	> th	dose dependent	sin	16	NA
348	238.21	temperature	25.0	90	> th	dose dependent	rect.	1	3
363	238.27	atmosphere	995.0	14400	< th	dose independent	rect.	18	1
366	238.27	atmosphere	995.0	14400	< th	dose dependent	rect.	18	1
370	238.28	wind	9.0	4320	> th	dose independent	rect.	13	8
373	238.29	wind	5.0	4320	> th	dose independent	rect.	17	4
382	238.32	atmosphere	1000.0	90	> th	dose dependent	rect.	12	1
384	238.33	atmosphere	1005.0	90	> th	dose independent	rect.	12	1
404	238.42	wind	9.0	4320	> th	dose independent	rect.	15	6
405	238.43	wind	5.0	4320	< th	dose independent	rect.	17	4
409	238.45	wind	9.0	4320	< th	dose independent	rect.	14	10
412	238.46	atmosphere	995.0	14400	> th	dose independent	rect.	11	8
419	238.47	atmosphere	995.0	14400	< th	dose independent	rect.	15	4
423	238.48	atmosphere	995.0	14400	> th	dose independent	rect.	7	12
426	238.49	wind	7.0	30	< th	dose independent	rect.	13	23
436	238.51	atmosphere	995.0	30	> th	dose dependent	rect.	12	14
440	238.52	wind	5.0	4320	> th	dose dependent	rect.	17	4
443	238.54	temperature	10.0	1440	> th	dose independent	rect.	13	1
447	238.54	atmosphere	995.0	1440	> th	dose independent	rect.	13	1
453	238.54	temperature	10.0	1440	> th	dose independent	rect.	14	23
458	238.56	wind	9.0	4320	< th	dose independent	sin	15	NA
470	238.58	temperature	20.0	720	> th	dose dependent	sin	7	NA
487	238.60	wind	9.0	4320	< th	dose independent	rect.	14	14
492	238.62	wind	9.0	4320	> th	dose independent	sin	15	NA
505	238.64	temperature	25.0	90	> th	dose independent	rect.	1	3
510	238.65	atmosphere	995.0	14400	> th	dose independent	rect.	8	5
548	238.67	wind	7.0	4320	> th	dose dependent	rect.	15	10
564	238.71	wind	5.0	4320	> th	dose dependent	rect.	8	2
637	238.88	atmosphere	1005.0	14400	< th	dose independent	sin	13	NA
644	238.89	atmosphere	1010.0	30	< th	dose dependent	rect.	12	1
645	238.89	temperature	25.0	10	> th	dose dependent	rect.	10	5
689	239.00	temperature	25.0	270	< th	dose independent	rect.	13	13
731	239.02	atmosphere	1010.0	30	< th	dose independent	rect.	12	1
732	239.02	wind	5.0	4320	> th	dose independent	rect.	19	2
735	239.02	wind	9.0	4320	> th	dose dependent	rect.	7	14
740	239.03	wind	9.0	4320	> th	dose dependent	rect.	9	12
761	239.08	wind	5.0	30	< th	dose independent	rect.	12	1
783	239.11	wind	5.0	4320	< th	dose independent	rect.	19	2
803	239.15	atmosphere	995.0	14400	> th	dose independent	rect.	10	3
814	239.16	atmosphere	1005.0	14400	> th	dose independent	sin	12	NA
816	239.16	temperature	30.0	10	> th	dose independent	rect.	18	20
826	239.16	wind	9.0	4320	> th	dose dependent	rect.	9	19
857	239.18	wind	9.0	4320	> th	dose dependent	rect.	17	23
860	239.19	wind	9.0	4320	> th	dose independent	rect.	13	21
870	239.21	wind	5.0	30	< th	dose dependent	rect.	12	1
876	239.22	wind	7.0	4320	< th	dose independent	rect.	8	1
877	239.22	radiation	40.0	30	> th	dose independent	rect.	12	1
902	239.25	wind	5.0	4320	> th	dose dependent	rect.	17	8
917	239.28	temperature	25.0	4320	< th	dose independent	rect.	24	1
918	239.28	temperature	25.0	4320	> th	dose independent	rect.	23	3
923	239.29	temperature	25.0	10	> th	dose dependent	sin	3	NA
942	239.35	temperature	20.0	4320	> th	dose independent	rect.	21	1
949	239.36	temperature	25.0	4320	< th	dose independent	rect.	23	4
952	239.37	wind	9.0	4320	< th	dose independent	rect.	18	3
957	239.37	atmosphere	1000.0	30	> th	dose independent	rect.	3	23
960	239.38	humidity	60.0	90	> th	dose independent	rect.	12	1
961	239.38	humidity	80.0	30	< th	dose independent	rect.	12	1