BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0838500 Os03g0838500|AK121130
(116 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71950.1 | chr1:27080453-27081573 REVERSE LENGTH=137 69 4e-13
AT1G66220.1 | chr1:24670536-24673661 FORWARD LENGTH=754 57 1e-09
AT4G21323.1 | chr4:11342494-11345632 FORWARD LENGTH=804 55 9e-09
AT5G11940.1 | chr5:3849283-3852417 FORWARD LENGTH=763 51 1e-07
AT4G21640.1 | chr4:11496834-11500618 REVERSE LENGTH=734 48 1e-06
AT5G59810.1 | chr5:24096895-24100387 REVERSE LENGTH=779 47 2e-06
AT1G32950.1 | chr1:11941438-11944599 FORWARD LENGTH=774 47 3e-06
AT4G21326.1 | chr4:11346685-11349653 FORWARD LENGTH=755 46 4e-06
AT4G21650.1 | chr4:11501314-11504656 REVERSE LENGTH=767 46 4e-06
AT4G10530.1 | chr4:6508600-6511670 FORWARD LENGTH=748 46 5e-06
AT4G10520.1 | chr4:6499794-6502866 FORWARD LENGTH=757 45 5e-06
AT3G46850.1 | chr3:17256338-17259442 FORWARD LENGTH=737 45 8e-06
>AT1G71950.1 | chr1:27080453-27081573 REVERSE LENGTH=137
Length = 136
Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 44/67 (65%)
Query: 48 YQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSATLSL 107
Y L L++ALGSEE AK A+IY+YK SGFSA+LTP ++ + KQP V +V+PS T L
Sbjct: 65 YHLRTLSSALGSEEAAKDALIYSYKEAASGFSAKLTPEQVAEISKQPGVIQVVPSQTYQL 124
Query: 108 MSSNFDG 114
G
Sbjct: 125 HKPGGGG 131
>AT1G66220.1 | chr1:24670536-24673661 FORWARD LENGTH=754
Length = 753
Score = 57.4 bits (137), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 48/75 (64%), Gaps = 3/75 (4%)
Query: 40 PSGVVCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRV 99
P V + YQ IL LGS+E AK +++YNYK+ SGF+A+LT S+ + + P+V RV
Sbjct: 50 PELVTKSHYQ--ILEPLLGSKEAAKNSLVYNYKHGFSGFAAKLTASQAKNLSAHPEVLRV 107
Query: 100 LPSATLSLMSS-NFD 113
+PS + L ++ FD
Sbjct: 108 VPSRVMRLKTTRTFD 122
>AT4G21323.1 | chr4:11342494-11345632 FORWARD LENGTH=804
Length = 803
Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 44 VCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSA 103
+ T L IL + LGSEE +++Y+Y + SGF+A+L P+E E +KK P+V +L +
Sbjct: 95 LVTQSHLEILKSVLGSEEATNKSMVYSYHHGFSGFAAKLKPAEAEKLKKHPEVIILLENR 154
Query: 104 TLSLMSS 110
L L ++
Sbjct: 155 KLGLQTT 161
>AT5G11940.1 | chr5:3849283-3852417 FORWARD LENGTH=763
Length = 762
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 44 VCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSA 103
+ T+ L +L + LGS++ A +I+++Y+N SGF+A LT S+ E + + P V +V P+
Sbjct: 52 LVTSSHLRMLESLLGSKKDASESIVHSYRNGFSGFAAHLTDSQAEQISEHPDVVQVTPNT 111
Query: 104 TLSLMSSN-FD 113
L ++ FD
Sbjct: 112 FYELQTTRTFD 122
>AT4G21640.1 | chr4:11496834-11500618 REVERSE LENGTH=734
Length = 733
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%)
Query: 44 VCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSA 103
+ TA +L + L S+E A ++IY+Y++ SGF+A LT S+ + + + P+V V+P+
Sbjct: 56 LLTASHHQMLESLLQSKEDAHNSMIYSYQHGFSGFAALLTSSQAKKISEHPEVIHVIPNR 115
Query: 104 TLSLMSSNF 112
L L ++
Sbjct: 116 ILKLKTTRI 124
>AT5G59810.1 | chr5:24096895-24100387 REVERSE LENGTH=779
Length = 778
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 49 QLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSATLSLM 108
+ LA+ +GS E AK AI Y+YK ++GF+A L +E + K P V V P+ L
Sbjct: 67 HRTFLASFVGSHENAKEAIFYSYKRHINGFAAILDENEAAEIAKHPDVVSVFPNKGRKLH 126
Query: 109 SSN 111
+++
Sbjct: 127 TTH 129
>AT1G32950.1 | chr1:11941438-11944599 FORWARD LENGTH=774
Length = 773
Score = 46.6 bits (109), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%)
Query: 46 TAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSATL 105
T +L++ LGS++ A +++Y+Y++ SGF+A+LT S+ + + P+V V+P +
Sbjct: 46 TESHHQMLSSLLGSKDDAHESMVYSYRHGFSGFAAKLTKSQAKKIADSPEVIHVIPDSYY 105
Query: 106 SLMSS 110
L ++
Sbjct: 106 ELATT 110
>AT4G21326.1 | chr4:11346685-11349653 FORWARD LENGTH=755
Length = 754
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 41 SGVVCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVL 100
S +V ++Q +L + S E A+ +I+YNY + SGF+ARLT S+ + + +P V V
Sbjct: 51 SELVSESHQ-RMLESVFESAEAARESIVYNYHHGFSGFAARLTDSQAKQLSDRPDVFSVA 109
Query: 101 PSATLSLMSS 110
P+ + L S+
Sbjct: 110 PNRKVELQST 119
>AT4G21650.1 | chr4:11501314-11504656 REVERSE LENGTH=767
Length = 766
Score = 45.8 bits (107), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 44 VCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRVLPSA 103
+ TA +L + L S+E A+ ++IY+Y++ SGF+A LT S+ + + + P+V V+P+
Sbjct: 56 LVTASHHQMLESLLQSKEDAQNSLIYSYQHGFSGFAALLTSSQAKKISEHPEVIHVIPNR 115
Query: 104 TLSLMSS 110
L ++
Sbjct: 116 IRKLKTT 122
>AT4G10530.1 | chr4:6508600-6511670 FORWARD LENGTH=748
Length = 747
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 40 PSGVVCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRV 99
P V + +Q+ L + LGS+E +I+Y+Y++ SGF+A+LT S+ + + + P+V +V
Sbjct: 42 PESVTESHHQM--LWSLLGSKEAVLDSIVYSYRHGFSGFAAKLTESQAQQISELPEVVQV 99
Query: 100 LPSATLSLMSS 110
+P+ + ++
Sbjct: 100 IPNTLYEMTTT 110
>AT4G10520.1 | chr4:6499794-6502866 FORWARD LENGTH=757
Length = 756
Score = 45.4 bits (106), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 40 PSGVVCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEAVKKQPQVNRV 99
P V + +Q+ L + LGS+E +I+Y+Y++ SGF+A+LT S+ + + + P+V +V
Sbjct: 42 PESVTESHHQM--LWSLLGSKEAVLDSIVYSYRHGFSGFAAKLTESQAQQISELPEVVQV 99
Query: 100 LPSATLSLMSS 110
+P+ + ++
Sbjct: 100 IPNTLYEMTTT 110
>AT3G46850.1 | chr3:17256338-17259442 FORWARD LENGTH=737
Length = 736
Score = 45.1 bits (105), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 6/89 (6%)
Query: 32 YLVFVDPPPSGV--VCTAYQLSILAAALGSEEKAKGAIIYNYKNVVSGFSARLTPSELEA 89
Y+V++ PS V + ++ SIL G E + ++ NYK +GF+ARLT SE E
Sbjct: 34 YIVYMGALPSRVDYMPMSHHTSILQDVTG-ESSIQDRLVRNYKRSFNGFAARLTESEREI 92
Query: 90 VKKQPQVNRVLPSATLSLMSS---NFDGI 115
+ +V V PS L+L ++ NF G+
Sbjct: 93 LASMDEVVSVFPSKNLNLQTTTSWNFMGL 121
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,910,908
Number of extensions: 59027
Number of successful extensions: 155
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 12
Length of query: 116
Length of database: 11,106,569
Length adjustment: 85
Effective length of query: 31
Effective length of database: 8,776,209
Effective search space: 272062479
Effective search space used: 272062479
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 104 (44.7 bits)