Os03g0832500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os03g0832500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.28 | 0.323 | 8.54 | -1.4 | 0.734 | -0.731 | 0.157 | -0.0425 | -0.622 | 7.79 | 81.01 | 769 | -- | -- |
| 47.25 | 0.32 | 8.54 | -1.4 | 0.731 | -0.732 | 0.155 | -- | -0.623 | 7.81 | 81 | 779 | -- | -- |
| 47.3 | 0.32 | 8.54 | -1.4 | 0.725 | -0.738 | -- | 0.0673 | -0.626 | 7.85 | 81.2 | 785 | -- | -- |
| 47.07 | 0.32 | 8.54 | -1.38 | 0.721 | -0.735 | -- | -- | -0.626 | 7.88 | 82.19 | 781 | -- | -- |
| 52.83 | 0.339 | 8.57 | -1.51 | -- | -0.751 | -- | 0.194 | -0.705 | -- | 75.91 | 1337 | -- | -- |
| 58.4 | 0.358 | 8.54 | -1.38 | 0.343 | -- | 0.035 | -- | -0.593 | 6.79 | -- | -- | -- | -- |
| 58.41 | 0.358 | 8.54 | -1.38 | 0.344 | -- | -- | -- | -0.593 | 6.77 | -- | -- | -- | -- |
| 52.57 | 0.338 | 8.57 | -1.47 | -- | -0.8 | -- | -- | -0.672 | -- | 75 | 1349 | -- | -- |
| 96.23 | 0.457 | 8.52 | -- | 0.68 | -0.751 | -- | -- | -0.514 | 8.17 | 84.88 | 773 | -- | -- |
| 64.58 | 0.376 | 8.55 | -1.38 | -- | -- | -- | -- | -0.586 | -- | -- | -- | -- | -- |
| 108.85 | 0.488 | 8.51 | -- | 0.328 | -- | -- | -- | -0.439 | 7.02 | -- | -- | -- | -- |
| 101.01 | 0.468 | 8.51 | -- | -- | -0.941 | -- | -- | -0.437 | -- | 83 | 1416 | -- | -- |
| 114.5 | 0.499 | 8.52 | -- | -- | -- | -- | -- | -0.433 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.18 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 2 | 46.29 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 4 | 46.38 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 17 | 46.76 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 9 |
| 22 | 46.80 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 8 |
| 38 | 47.11 | humidity | 80 | 720 | > th | dose dependent | rect. | 5 | 18 |
| 59 | 47.27 | humidity | 80 | 720 | > th | dose independent | rect. | 6 | 19 |
| 60 | 47.27 | humidity | 80 | 720 | > th | dose independent | rect. | 15 | 20 |
| 66 | 47.29 | humidity | 80 | 1440 | < th | dose independent | sin | 2 | NA |
| 67 | 47.30 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |
| 77 | 47.33 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 83 | 47.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 90 | 47.36 | humidity | 80 | 1440 | > th | dose independent | rect. | 23 | 18 |
| 103 | 47.38 | humidity | 80 | 1440 | > th | dose independent | rect. | 1 | 20 |
| 107 | 47.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 2 | 13 |
| 110 | 47.40 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 19 |
| 200 | 47.51 | humidity | 80 | 1440 | > th | dose independent | rect. | 19 | 22 |
| 258 | 47.60 | humidity | 70 | 1440 | > th | dose dependent | rect. | 2 | 18 |
| 262 | 47.61 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 23 |
| 273 | 47.63 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 287 | 47.65 | humidity | 80 | 1440 | < th | dose independent | rect. | 19 | 22 |
| 343 | 47.72 | humidity | 70 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 357 | 47.74 | humidity | 60 | 720 | > th | dose dependent | sin | 13 | NA |
| 395 | 47.79 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 410 | 47.80 | humidity | 70 | 1440 | > th | dose dependent | sin | 1 | NA |
| 424 | 47.82 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 429 | 47.82 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 21 |
| 474 | 47.87 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 476 | 47.88 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 509 | 47.91 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 9 |
| 555 | 47.94 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 7 |
| 580 | 47.95 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 21 |
| 656 | 48.01 | humidity | 80 | 1440 | < th | dose independent | no | NA | NA |
| 657 | 48.01 | humidity | 80 | 720 | < th | dose independent | rect. | 16 | 6 |
| 770 | 48.10 | humidity | 80 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 867 | 48.17 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 943 | 48.23 | humidity | 90 | 1440 | < th | dose dependent | rect. | 14 | 20 |