BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0832500 Os03g0832500|AK106890
         (647 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17030.1  | chr3:5804509-5808462 REVERSE LENGTH=669            550   e-157

>AT3G17030.1 | chr3:5804509-5808462 REVERSE LENGTH=669
          Length = 668

 Score =  550 bits (1418), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/605 (48%), Positives = 392/605 (64%), Gaps = 17/605 (2%)

Query: 54  QVLKSCCAYSSGVTAAILLSDLFQSWTEQSKSLTAKRKVEXXXXXXXXXXXXXXXXXXXI 113
           ++LK+C AYSSGVTAAILLSDL Q+W EQ+K   +K+K E                   I
Sbjct: 67  RILKTCTAYSSGVTAAILLSDLSQAWHEQNKPGMSKKKPELIDQLKKGHRRRRLANTVTI 126

Query: 114 DSIHEKNFLSPKSVLEAVVIDVFVIPGTNIYMLTLGDMWSTSTIDLYLHRRYYNYI-GQH 172
           DSI+EKNFLS  SVLEAV+I+  V+PGTNI+MLTLGD WS++TIDLYLHRRYY  +   +
Sbjct: 127 DSIYEKNFLSMNSVLEAVIINADVLPGTNIFMLTLGDFWSSNTIDLYLHRRYYELVETPN 186

Query: 173 DVLKKGREVMLTGCCLRTAMEGSGHARILPTEYMVXXXXXXXXXXXXXXXXQFCMYSFSS 232
            +L+KGREV++TGC LRTA EG G  R+LPTEY+V                QFC  +FSS
Sbjct: 187 GILRKGREVLITGCYLRTAREGFGTPRLLPTEYLVVLLDEDQDDDAILIAAQFCSDTFSS 246

Query: 233 MMLDENRNNISYSFYARIEKIESLEP---FGSTERKQIVLVDNDDAKIKFVLWGEQVLLA 289
           + LD   +  SYS YARIE I  LE    F +  R+QI LVD D  ++KF+LWGEQV++A
Sbjct: 247 VSLDAFNDGASYSLYARIESIGPLESELTFSTARRRQISLVDGDGDRLKFILWGEQVIVA 306

Query: 290 NLFSVGSMLALHRPFIANYVHNNHEESQELCLEYGSATQVYLVPIAQQEEQVLLTPTQIR 349
           NL SVGS+L + RP+I++   +  E + E CLEYGSAT +YLVP   QEE+V +  +Q +
Sbjct: 307 NLLSVGSVLGIERPYISSLEESAMEGNYEFCLEYGSATHLYLVPSTLQEERVCVALSQHQ 366

Query: 350 SQGSRLSCVPSDHMASQVTLPRDLHGSVDFSKYPFRVYVSDLHDKMVGVSLFGMVTSV-C 408
            QGS+L         SQVTLPRD  GSVDFS YPFR  ++D+ DK  G+SL+G+VT + C
Sbjct: 367 CQGSKL---LGSVGVSQVTLPRDADGSVDFSNYPFRTMITDIRDKTTGISLYGVVTDISC 423

Query: 409 KASTSGTYFYLEIEDATGVVLMKLNFIGLWSLGRVGVGHMVYMSGLTCTLSSTNKLEVAW 468
             + +G  F L+IED TG +  KL+F   WSLGR+G+GH+VY+SGL+C ++  N +E+ W
Sbjct: 424 DPNATGVVFSLKIEDTTGAIWAKLHFTNYWSLGRLGLGHVVYVSGLSCKITKENCIEMLW 483

Query: 469 TEKEPGSLFVNISLLPALLNSTCLHNLSLLSDLPHSTNRT-HICHVRLDHID-VNSLKVL 526
            EK+  + FVN+S LPA L S+C+H +S LS +        +IC V+LD ID  +++   
Sbjct: 484 HEKDEKATFVNLSCLPAFLTSSCIHLISTLSQISKQRKPAINICRVKLDEIDQCHNINTR 543

Query: 527 LFHNLCGCVVSDQS-----GGLQCSFCKCACHI-SGCTHGFQLHLTIADDSEKVFAWCIG 580
           L H+LCG  + ++S       L CSFC+ +C+  +     F + +T+AD+  K++AWC G
Sbjct: 544 LAHSLCGHFIDEESSSSYGANLHCSFCRVSCNSNTEVVRTFHITITLADEETKLYAWCTG 603

Query: 581 QTAVEFLQISPDEYMELPEDERAMYLYTLQNENFTVAIANTSQRIEAYIEGEKFLPVWEI 640
           Q+A   LQISPDE+ +LPED++ MY  +L+NE F V +AN+  R       E     WEI
Sbjct: 604 QSASAILQISPDEFCDLPEDDQLMYPSSLENEWFLVILANSGSRNLGSGH-ETDDTCWEI 662

Query: 641 TRAQK 645
           TRA K
Sbjct: 663 TRALK 667



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,150,003
Number of extensions: 474454
Number of successful extensions: 1065
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 542
Effective length of database: 8,227,889
Effective search space: 4459515838
Effective search space used: 4459515838
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 115 (48.9 bits)