BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0832500 Os03g0832500|AK106890
         (647 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0832500  Nucleic acid-binding, OB-fold domain containin...  1158   0.0  

>Os03g0832500 Nucleic acid-binding, OB-fold domain containing protein
          Length = 647

 Score = 1158 bits (2996), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 568/635 (89%), Positives = 568/635 (89%)

Query: 13  FLEFVDYAIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQVLKSCCAYSSGVTAAILL 72
           FLEFVDYAI                                QVLKSCCAYSSGVTAAILL
Sbjct: 13  FLEFVDYAISMLSSSSSGGNGDESPGAGPAPARPPWGWAVAQVLKSCCAYSSGVTAAILL 72

Query: 73  SDLFQSWTEQSKSLTAKRKVEXXXXXXXXXXXXXXXXXXXIDSIHEKNFLSPKSVLEAVV 132
           SDLFQSWTEQSKSLTAKRKVE                   IDSIHEKNFLSPKSVLEAVV
Sbjct: 73  SDLFQSWTEQSKSLTAKRKVELTNLLKTRNRRRRLPNTITIDSIHEKNFLSPKSVLEAVV 132

Query: 133 IDVFVIPGTNIYMLTLGDMWSTSTIDLYLHRRYYNYIGQHDVLKKGREVMLTGCCLRTAM 192
           IDVFVIPGTNIYMLTLGDMWSTSTIDLYLHRRYYNYIGQHDVLKKGREVMLTGCCLRTAM
Sbjct: 133 IDVFVIPGTNIYMLTLGDMWSTSTIDLYLHRRYYNYIGQHDVLKKGREVMLTGCCLRTAM 192

Query: 193 EGSGHARILPTEYMVXXXXXXXXXXXXXXXXQFCMYSFSSMMLDENRNNISYSFYARIEK 252
           EGSGHARILPTEYMV                QFCMYSFSSMMLDENRNNISYSFYARIEK
Sbjct: 193 EGSGHARILPTEYMVMLLDEEEDEDAMLLAAQFCMYSFSSMMLDENRNNISYSFYARIEK 252

Query: 253 IESLEPFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANLFSVGSMLALHRPFIANYVHNN 312
           IESLEPFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANLFSVGSMLALHRPFIANYVHNN
Sbjct: 253 IESLEPFGSTERKQIVLVDNDDAKIKFVLWGEQVLLANLFSVGSMLALHRPFIANYVHNN 312

Query: 313 HEESQELCLEYGSATQVYLVPIAQQEEQVLLTPTQIRSQGSRLSCVPSDHMASQVTLPRD 372
           HEESQELCLEYGSATQVYLVPIAQQEEQVLLTPTQIRSQGSRLSCVPSDHMASQVTLPRD
Sbjct: 313 HEESQELCLEYGSATQVYLVPIAQQEEQVLLTPTQIRSQGSRLSCVPSDHMASQVTLPRD 372

Query: 373 LHGSVDFSKYPFRVYVSDLHDKMVGVSLFGMVTSVCKASTSGTYFYLEIEDATGVVLMKL 432
           LHGSVDFSKYPFRVYVSDLHDKMVGVSLFGMVTSVCKASTSGTYFYLEIEDATGVVLMKL
Sbjct: 373 LHGSVDFSKYPFRVYVSDLHDKMVGVSLFGMVTSVCKASTSGTYFYLEIEDATGVVLMKL 432

Query: 433 NFIGLWSLGRVGVGHMVYMSGLTCTLSSTNKLEVAWTEKEPGSLFVNISLLPALLNSTCL 492
           NFIGLWSLGRVGVGHMVYMSGLTCTLSSTNKLEVAWTEKEPGSLFVNISLLPALLNSTCL
Sbjct: 433 NFIGLWSLGRVGVGHMVYMSGLTCTLSSTNKLEVAWTEKEPGSLFVNISLLPALLNSTCL 492

Query: 493 HNLSLLSDLPHSTNRTHICHVRLDHIDVNSLKVLLFHNLCGCVVSDQSGGLQCSFCKCAC 552
           HNLSLLSDLPHSTNRTHICHVRLDHIDVNSLKVLLFHNLCGCVVSDQSGGLQCSFCKCAC
Sbjct: 493 HNLSLLSDLPHSTNRTHICHVRLDHIDVNSLKVLLFHNLCGCVVSDQSGGLQCSFCKCAC 552

Query: 553 HISGCTHGFQLHLTIADDSEKVFAWCIGQTAVEFLQISPDEYMELPEDERAMYLYTLQNE 612
           HISGCTHGFQLHLTIADDSEKVFAWCIGQTAVEFLQISPDEYMELPEDERAMYLYTLQNE
Sbjct: 553 HISGCTHGFQLHLTIADDSEKVFAWCIGQTAVEFLQISPDEYMELPEDERAMYLYTLQNE 612

Query: 613 NFTVAIANTSQRIEAYIEGEKFLPVWEITRAQKCE 647
           NFTVAIANTSQRIEAYIEGEKFLPVWEITRAQKCE
Sbjct: 613 NFTVAIANTSQRIEAYIEGEKFLPVWEITRAQKCE 647



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,165,128
Number of extensions: 683664
Number of successful extensions: 1433
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1430
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 540
Effective length of database: 11,448,903
Effective search space: 6182407620
Effective search space used: 6182407620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 159 (65.9 bits)