Os03g0832200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-binding protein precursor (Calreticulin).
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Os03g0832200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-binding protein precursor (Calreticulin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 440.86 | 0.987 | 4.75 | -0.341 | 0.922 | 3.43 | 1.11 | -1.21 | -0.621 | 4.33 | 22.05 | 63 | -- | -- |
| 440.6 | 0.985 | 4.73 | -0.11 | 0.876 | 3.43 | 1.06 | -- | -0.569 | 3.51 | 22.05 | 63 | -- | -- |
| 442.02 | 0.987 | 4.76 | -0.368 | 0.884 | 3.51 | -- | -1.52 | -0.645 | 3.24 | 22.05 | 63 | -- | -- |
| 443.91 | 0.988 | 4.73 | -0.121 | 0.864 | 3.39 | -- | -- | -0.568 | 3.28 | 22.05 | 63 | -- | -- |
| 470.87 | 1.02 | 4.72 | -0.104 | -- | 2.69 | -- | -0.999 | -0.478 | -- | 22.05 | 63 | -- | -- |
| 626.33 | 1.17 | 4.61 | 0.544 | 0.487 | -- | 0.287 | -- | -0.024 | 13 | -- | -- | -- | -- |
| 626.65 | 1.17 | 4.61 | 0.554 | 0.488 | -- | -- | -- | -0.022 | 13.2 | -- | -- | -- | -- |
| 471.7 | 1.02 | 4.7 | 0.0552 | -- | 2.63 | -- | -- | -0.43 | -- | 22.05 | 63 | -- | -- |
| 444.28 | 0.987 | 4.73 | -- | 0.846 | 3.35 | -- | -- | -0.551 | 3.28 | 22 | 34 | -- | -- |
| 641.39 | 1.18 | 4.62 | 0.536 | -- | -- | -- | -- | -0.0319 | -- | -- | -- | -- | -- |
| 634.75 | 1.18 | 4.62 | -- | 0.479 | -- | -- | -- | -0.0838 | 13.2 | -- | -- | -- | -- |
| 471.72 | 1.01 | 4.71 | -- | -- | 2.64 | -- | -- | -0.439 | -- | 22 | 34 | -- | -- |
| 648.96 | 1.19 | 4.63 | -- | -- | -- | -- | -- | -0.0914 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 442.31 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 22 |
| 13 | 448.13 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 15 | 448.95 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 17 | 449.16 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 29 | 449.86 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 34 | 450.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 39 | 450.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 42 | 450.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 44 | 450.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 50 | 451.04 | temperature | 30 | 1440 | < th | dose dependent | rect. | 6 | 3 |
| 59 | 451.35 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 5 |
| 63 | 451.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 64 | 451.49 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 5 |
| 68 | 451.64 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 19 |
| 69 | 451.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 82 | 452.02 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 19 |
| 110 | 452.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 4 |
| 115 | 452.47 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 119 | 452.50 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 126 | 452.68 | temperature | 25 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 127 | 452.68 | temperature | 25 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 141 | 452.74 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 151 | 452.90 | temperature | 30 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 159 | 453.01 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 176 | 453.21 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 178 | 453.25 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 181 | 453.28 | radiation | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 189 | 453.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 17 |
| 205 | 453.75 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 212 | 453.79 | radiation | 1 | 14400 | < th | dose independent | sin | 10 | NA |
| 284 | 454.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 4 |
| 291 | 454.78 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 329 | 455.09 | temperature | 20 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 335 | 455.20 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 14 |
| 339 | 455.25 | temperature | 20 | 14400 | > th | dose dependent | rect. | 20 | 2 |
| 341 | 455.26 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 349 | 455.34 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 354 | 455.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 367 | 455.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 386 | 455.47 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 7 |
| 393 | 455.55 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 399 | 455.59 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 12 |
| 405 | 455.62 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 433 | 455.66 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 15 |
| 439 | 455.67 | radiation | 1 | 14400 | < th | dose independent | rect. | 6 | 17 |
| 443 | 455.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 452 | 455.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 14 | 22 |
| 453 | 455.70 | radiation | 1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 460 | 455.72 | radiation | 1 | 14400 | < th | dose independent | rect. | 9 | 23 |
| 466 | 455.75 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 467 | 455.77 | radiation | 1 | 14400 | < th | dose independent | rect. | 14 | 22 |
| 474 | 455.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 18 |
| 475 | 455.82 | radiation | 1 | 14400 | < th | dose independent | rect. | 3 | 20 |
| 497 | 455.85 | radiation | 1 | 14400 | > th | dose independent | no | NA | NA |
| 498 | 455.85 | radiation | 1 | 14400 | > th | dose independent | rect. | 4 | 15 |
| 557 | 455.87 | radiation | 1 | 14400 | < th | dose independent | no | NA | NA |
| 590 | 455.89 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 23 |
| 666 | 456.09 | radiation | 1 | 14400 | < th | dose independent | sin | 2 | NA |
| 702 | 456.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 775 | 456.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 779 | 456.73 | temperature | 30 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 788 | 456.79 | temperature | 20 | 14400 | > th | dose dependent | rect. | 16 | 17 |
| 798 | 456.82 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 884 | 457.22 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 886 | 457.23 | radiation | 30 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 903 | 457.31 | temperature | 20 | 14400 | > th | dose dependent | sin | 12 | NA |
| 913 | 457.34 | temperature | 25 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 948 | 457.46 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 958 | 457.50 | temperature | 25 | 14400 | > th | dose dependent | sin | 5 | NA |