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Os03g0824400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dolichol-phosphate mannosyltransferase (EC 2.4.1.83) (Dolichol- phosphate mannose synthase) (Dolichyl-phosphate beta-D- mannosyltransferase) (Mannose-P-dolichol synthase) (MPD synthase) (DPM synthase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.93 | 0.22 | 10.4 | -0.327 | 0.742 | 0.462 | 0.0272 | -0.157 | 0.0961 | 2.86 | 39.95 | 1429 | -- | -- |
| 21.97 | 0.218 | 10.4 | -0.339 | 0.743 | 0.457 | 0.0367 | -- | 0.0925 | 2.86 | 39.95 | 1429 | -- | -- |
| 21.94 | 0.218 | 10.4 | -0.327 | 0.742 | 0.462 | -- | -0.158 | 0.0962 | 2.86 | 39.96 | 1429 | -- | -- |
| 21.98 | 0.218 | 10.4 | -0.341 | 0.743 | 0.458 | -- | -- | 0.0917 | 2.86 | 39.97 | 1429 | -- | -- |
| 34.42 | 0.273 | 10.4 | -0.285 | -- | 0.991 | -- | 0.143 | 0.116 | -- | 35.36 | 385 | -- | -- |
| 27.11 | 0.244 | 10.5 | -0.357 | 0.717 | -- | -0.0121 | -- | 0.00822 | 2.93 | -- | -- | -- | -- |
| 27.11 | 0.244 | 10.5 | -0.357 | 0.717 | -- | -- | -- | 0.00829 | 2.93 | -- | -- | -- | -- |
| 25.13 | 0.233 | 10.5 | -0.372 | -- | 0.698 | -- | -- | 0.0363 | -- | 6.293 | 395 | -- | -- |
| 24.27 | 0.229 | 10.4 | -- | 0.751 | 0.348 | -- | -- | 0.159 | 2.87 | 40.28 | 1432 | -- | -- |
| 56.74 | 0.352 | 10.5 | -0.326 | -- | -- | -- | -- | 0.0268 | -- | -- | -- | -- | -- |
| 30.46 | 0.258 | 10.5 | -- | 0.71 | -- | -- | -- | 0.048 | 2.92 | -- | -- | -- | -- |
| 28.07 | 0.247 | 10.4 | -- | -- | 0.758 | -- | -- | 0.125 | -- | 10.22 | 378 | -- | -- |
| 59.54 | 0.36 | 10.5 | -- | -- | -- | -- | -- | 0.063 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.68 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 2 | 21.71 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 20 | 21.78 | radiation | 30 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 21 | 21.79 | temperature | 20 | 14400 | > th | dose independent | sin | 15 | NA |
| 24 | 21.79 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 3 |
| 26 | 21.80 | radiation | 40 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 36 | 21.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 46 | 21.83 | radiation | 40 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 50 | 21.84 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 61 | 21.84 | radiation | 40 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 67 | 21.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 72 | 21.85 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 79 | 21.85 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 87 | 21.86 | temperature | 25 | 14400 | < th | dose dependent | rect. | 11 | 12 |
| 89 | 21.86 | radiation | 30 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 98 | 21.87 | temperature | 25 | 14400 | < th | dose dependent | rect. | 12 | 10 |
| 104 | 21.88 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 118 | 21.89 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 131 | 21.90 | radiation | 30 | 1440 | < th | dose independent | rect. | 8 | 2 |
| 138 | 21.90 | radiation | 40 | 1440 | < th | dose independent | rect. | 13 | 21 |
| 160 | 21.92 | radiation | 40 | 1440 | < th | dose independent | rect. | 8 | 15 |
| 173 | 21.93 | radiation | 40 | 1440 | < th | dose independent | sin | 1 | NA |
| 194 | 21.93 | radiation | 40 | 1440 | > th | dose independent | rect. | 13 | 21 |
| 227 | 21.94 | radiation | 40 | 1440 | < th | dose independent | rect. | 6 | 16 |
| 243 | 21.94 | radiation | 40 | 1440 | < th | dose independent | rect. | 2 | 20 |
| 266 | 21.94 | temperature | 25 | 14400 | < th | dose dependent | sin | 19 | NA |
| 277 | 21.95 | radiation | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 279 | 21.95 | radiation | 40 | 1440 | < th | dose independent | no | NA | NA |
| 385 | 21.96 | temperature | 20 | 14400 | < th | dose independent | sin | 15 | NA |
| 387 | 21.96 | radiation | 30 | 1440 | < th | dose independent | sin | 11 | NA |
| 416 | 21.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 424 | 21.98 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 517 | 22.01 | radiation | 30 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 602 | 22.05 | radiation | 20 | 1440 | > th | dose dependent | rect. | 15 | 19 |
| 603 | 22.05 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 604 | 22.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 612 | 22.06 | radiation | 30 | 1440 | < th | dose independent | rect. | 21 | 13 |
| 630 | 22.06 | radiation | 40 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 680 | 22.08 | temperature | 20 | 14400 | > th | dose independent | rect. | 4 | 23 |
| 689 | 22.08 | radiation | 30 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 737 | 22.09 | radiation | 10 | 1440 | > th | dose dependent | sin | 6 | NA |
| 774 | 22.10 | radiation | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 786 | 22.11 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 854 | 22.12 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 855 | 22.12 | radiation | 40 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 859 | 22.12 | radiation | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 860 | 22.12 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 861 | 22.12 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
