BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0824400 Os03g0824400|AK104298
(243 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20575.1 | chr1:7126987-7128677 REVERSE LENGTH=247 436 e-123
AT2G39630.1 | chr2:16522008-16524561 REVERSE LENGTH=337 57 8e-09
>AT1G20575.1 | chr1:7126987-7128677 REVERSE LENGTH=247
Length = 246
Score = 436 bits (1121), Expect = e-123, Method: Compositional matrix adjust.
Identities = 210/246 (85%), Positives = 230/246 (93%), Gaps = 3/246 (1%)
Query: 1 MADD---AGGGRREYSIIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDGSPDGTQDI 57
MAD+ G + +YSII+PTYNERLN+A+IVYLIFKHL DV+FEIIVVDDGSPDGTQ+I
Sbjct: 1 MADEMETKGEKKYKYSIIIPTYNERLNIAIIVYLIFKHLRDVDFEIIVVDDGSPDGTQEI 60
Query: 58 VKQLQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSFIRK 117
VKQLQQ+YGE+R+LLRAR +KLGLGTAY+HGLKHA+GDFVVIMDADLSHHPKYLPSFI+K
Sbjct: 61 VKQLQQLYGEDRILLRARAKKLGLGTAYIHGLKHATGDFVVIMDADLSHHPKYLPSFIKK 120
Query: 118 QKETGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNV 177
Q ET A +VTGTRYV+ GGVHGWNLMRKLTSRGANVLAQTLL PG SDLTGSFRLYK++
Sbjct: 121 QLETNASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTLLWPGVSDLTGSFRLYKKSA 180
Query: 178 LEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLV 237
LED+ISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLV
Sbjct: 181 LEDVISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLV 240
Query: 238 YLLLTT 243
YLLLTT
Sbjct: 241 YLLLTT 246
>AT2G39630.1 | chr2:16522008-16524561 REVERSE LENGTH=337
Length = 336
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 40/248 (16%)
Query: 13 SIIVPTYNERLNVALIVYLIFKHLPD-------VNFEIIVVDDGSPDGTQDIVKQLQQIY 65
S+IVP YNE L + + +L D +FE+++VDDGS DGT+ + + Y
Sbjct: 69 SLIVPAYNEELRLPAALEETMDYLQDRASRDKSFSFEVVIVDDGSVDGTKRVAFDFIRKY 128
Query: 66 GENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSF----------- 114
+ + + + G G A G+ H+ G ++++DAD + L
Sbjct: 129 TIDNIRVIPLGKNQGKGEAIRKGMLHSRGQLLLMLDADGATKVTDLEKLENQINAVAREE 188
Query: 115 --IRKQKETGADVVTGTRYVQNGGVHG-----------WNLMRKLTSRGANVLAQTLLQP 161
IR D G V G W R +G +++ P
Sbjct: 189 YSIRNPASKDMDFKIGDVQVSAFGSRAHLEEKALATRKW--YRNFLMKGFHLVVLLAAGP 246
Query: 162 GASDLTGSFRLYKRNVLEDLISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGT 221
G D F+++ R L ++ K + F +E++ R + E+ + +
Sbjct: 247 GIRDTQCGFKMFTRAAARRLFTNVHLKRWCFDVELVYLCKRFNIPMVEISVKW------- 299
Query: 222 SKLGGSEI 229
S++ GS++
Sbjct: 300 SEIPGSKV 307
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.140 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,294,659
Number of extensions: 219798
Number of successful extensions: 529
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 147
Effective length of database: 8,474,633
Effective search space: 1245771051
Effective search space used: 1245771051
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)