BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0824400 Os03g0824400|AK104298
         (243 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0824400  Similar to Dolichol-phosphate mannosyltransfer...   497   e-141
AK062948                                                          290   6e-79

>Os03g0824400 Similar to Dolichol-phosphate mannosyltransferase (EC 2.4.1.83)
           (Dolichol- phosphate mannose synthase)
           (Dolichyl-phosphate beta-D- mannosyltransferase)
           (Mannose-P-dolichol synthase) (MPD synthase) (DPM
           synthase)
          Length = 243

 Score =  497 bits (1279), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MADDAGGGRREYSIIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDGSPDGTQDIVKQ 60
           MADDAGGGRREYSIIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDGSPDGTQDIVKQ
Sbjct: 1   MADDAGGGRREYSIIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDGSPDGTQDIVKQ 60

Query: 61  LQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSFIRKQKE 120
           LQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSFIRKQKE
Sbjct: 61  LQQIYGENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSFIRKQKE 120

Query: 121 TGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLED 180
           TGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLED
Sbjct: 121 TGADVVTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLED 180

Query: 181 LISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLVYLL 240
           LISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLVYLL
Sbjct: 181 LISSCVSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLVYLL 240

Query: 241 LTT 243
           LTT
Sbjct: 241 LTT 243



>AK062948 
          Length = 239

 Score =  290 bits (742), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 140/238 (58%), Positives = 180/238 (75%), Gaps = 2/238 (0%)

Query: 8   GRREYSIIVPTYNERLNVALIVYLIFKHL--PDVNFEIIVVDDGSPDGTQDIVKQLQQIY 65
            + +YS+++PTYNER N+ LIV+L+ K     D+ FEI++V+D SPDGT  + + LQ+IY
Sbjct: 2   AKPKYSVLLPTYNERENLPLIVWLLEKTFRENDLAFEIVIVEDNSPDGTLQVAQDLQKIY 61

Query: 66  GENRVLLRARPRKLGLGTAYLHGLKHASGDFVVIMDADLSHHPKYLPSFIRKQKETGADV 125
           G++++++  R  KLGLG+AY  GLK A+GDFV +MDADLSHHPK++P FI  Q ++  D+
Sbjct: 62  GKSQIVILPRKGKLGLGSAYRDGLKLATGDFVFLMDADLSHHPKFIPEFIAAQAQSNCDI 121

Query: 126 VTGTRYVQNGGVHGWNLMRKLTSRGANVLAQTLLQPGASDLTGSFRLYKRNVLEDLISSC 185
           VTGTRYV  GGV GW+L RKLTSR AN LA  LL P  SDLTGSFRLYKR V+ED+++S 
Sbjct: 122 VTGTRYVSGGGVFGWDLRRKLTSRVANYLATVLLNPHCSDLTGSFRLYKRAVIEDIMASI 181

Query: 186 VSKGYVFQMEMIVRATRKGYHIEEVPITFVDRVFGTSKLGGSEIVEYLKGLVYLLLTT 243
              GYVFQME++VRA  K Y + EVPITFVDR++G SKLG  EIV YLKGL+ L  TT
Sbjct: 182 QGLGYVFQMEILVRARMKQYSLAEVPITFVDRIYGESKLGAGEIVAYLKGLLNLFFTT 239



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.140    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,507,051
Number of extensions: 349017
Number of successful extensions: 615
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 615
Number of HSP's successfully gapped: 2
Length of query: 243
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 145
Effective length of database: 11,918,829
Effective search space: 1728230205
Effective search space used: 1728230205
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)