Os03g0820900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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Os03g0820900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cellular retinaldehyde-binding/triple function, C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.46 | 0.228 | 10.9 | 1.11 | 0.99 | 0.4 | 0.209 | 1.83 | 0.284 | 8.53 | 42.74 | 3581 | -- | -- |
| 25.63 | 0.236 | 10.8 | 0.989 | 1.05 | 0.447 | 0.2 | -- | 0.261 | 8.23 | 43.15 | 2145 | -- | -- |
| 23.38 | 0.225 | 10.9 | 1.12 | 0.958 | 0.459 | -- | 2.04 | 0.298 | 8.55 | 46.52 | 3601 | -- | -- |
| 25.52 | 0.235 | 10.9 | 0.986 | 1.05 | 0.42 | -- | -- | 0.232 | 8.2 | 40.03 | 2122 | -- | -- |
| 76.06 | 0.406 | 10.9 | 1.11 | -- | 0.551 | -- | 2 | 0.294 | -- | 46.93 | 4520 | -- | -- |
| 29.53 | 0.255 | 10.8 | 0.99 | 0.963 | -- | 0.127 | -- | 0.287 | 8.44 | -- | -- | -- | -- |
| 29.58 | 0.255 | 10.8 | 0.994 | 0.963 | -- | -- | -- | 0.287 | 8.43 | -- | -- | -- | -- |
| 78.88 | 0.414 | 10.9 | 1.07 | -- | 0.402 | -- | -- | 0.299 | -- | 39.42 | 4437 | -- | -- |
| 50.59 | 0.331 | 10.9 | -- | 1.1 | 0.502 | -- | -- | 0.135 | 7.99 | 40 | 2081 | -- | -- |
| 81.31 | 0.421 | 10.9 | 0.999 | -- | -- | -- | -- | 0.297 | -- | -- | -- | -- | -- |
| 55.61 | 0.349 | 10.9 | -- | 0.967 | -- | -- | -- | 0.177 | 8.36 | -- | -- | -- | -- |
| 78.17 | 0.412 | 10.9 | -- | -- | -0.907 | -- | -- | -0.0366 | -- | 57.28 | 47520 | -- | -- |
| 107.62 | 0.484 | 10.9 | -- | -- | -- | -- | -- | 0.186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.42 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 3 | 22.48 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 11 | 22.51 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 33 | 22.57 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 34 | 22.57 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 10 |
| 36 | 22.58 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 52 | 22.60 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 62 | 22.61 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 82 | 22.63 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 102 | 22.66 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 19 | NA |
| 122 | 22.69 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 131 | 22.70 | atmosphere | 1005 | 43200 | < th | dose independent | sin | 18 | NA |
| 144 | 22.70 | humidity | 70 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 150 | 22.71 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 15 |
| 190 | 22.75 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 257 | 22.84 | humidity | 70 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 266 | 22.87 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 3 | 17 |
| 270 | 22.87 | radiation | 40 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 271 | 22.87 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 278 | 22.89 | radiation | 40 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 286 | 22.89 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 287 | 22.89 | humidity | 70 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 313 | 22.90 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 343 | 22.95 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 371 | 22.98 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 19 |
| 381 | 22.99 | radiation | 40 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 417 | 23.02 | humidity | 70 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 459 | 23.05 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 505 | 23.07 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 512 | 23.08 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 514 | 23.08 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 538 | 23.09 | atmosphere | 1005 | 43200 | > th | dose dependent | sin | 8 | NA |
| 544 | 23.09 | radiation | 40 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 580 | 23.10 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 631 | 23.12 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 723 | 23.15 | humidity | 80 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 819 | 23.17 | atmosphere | 1005 | 43200 | > th | dose dependent | no | NA | NA |
| 820 | 23.17 | temperature | 25 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 846 | 23.17 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 2 | 22 |
| 856 | 23.17 | atmosphere | 1005 | 43200 | > th | dose dependent | rect. | 6 | 23 |
| 867 | 23.18 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 2 | 17 |
| 906 | 23.19 | humidity | 80 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 917 | 23.19 | radiation | 40 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 980 | 23.21 | radiation | 40 | 4320 | < th | dose independent | rect. | 8 | 1 |