BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0820900 Os03g0820900|AK072450
         (474 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0820900  Cellular retinaldehyde-binding/triple function...   945   0.0  

>Os03g0820900 Cellular retinaldehyde-binding/triple function, C-terminal domain
           containing protein
          Length = 474

 Score =  945 bits (2442), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/458 (100%), Positives = 458/458 (100%)

Query: 17  DRKYQGALVASPAKAISPKTVKQIVPGKHLILSGESTSHLASFLVKVIALEVVRRFSKAR 76
           DRKYQGALVASPAKAISPKTVKQIVPGKHLILSGESTSHLASFLVKVIALEVVRRFSKAR
Sbjct: 17  DRKYQGALVASPAKAISPKTVKQIVPGKHLILSGESTSHLASFLVKVIALEVVRRFSKAR 76

Query: 77  CPFIWNSIQALQVLGYPPFRWIQQWAPLKFIVQGIQKLSTPLLFLSVTTTLCDRSSKRND 136
           CPFIWNSIQALQVLGYPPFRWIQQWAPLKFIVQGIQKLSTPLLFLSVTTTLCDRSSKRND
Sbjct: 77  CPFIWNSIQALQVLGYPPFRWIQQWAPLKFIVQGIQKLSTPLLFLSVTTTLCDRSSKRND 136

Query: 137 ELGSNTEAPDVPSESDETASTSGIRDVADGTKDTEPDNWLISLFKELEKQGITLPERFNE 196
           ELGSNTEAPDVPSESDETASTSGIRDVADGTKDTEPDNWLISLFKELEKQGITLPERFNE
Sbjct: 137 ELGSNTEAPDVPSESDETASTSGIRDVADGTKDTEPDNWLISLFKELEKQGITLPERFNE 196

Query: 197 DELRRFYIAANGDFSSLLSSVKKTIRWRETFHILTLHELEKWSHLVFWHGFDTMLRPCLI 256
           DELRRFYIAANGDFSSLLSSVKKTIRWRETFHILTLHELEKWSHLVFWHGFDTMLRPCLI
Sbjct: 197 DELRRFYIAANGDFSSLLSSVKKTIRWRETFHILTLHELEKWSHLVFWHGFDTMLRPCLI 256

Query: 257 VRLGLACSSLAPSDRPRFGQAVVSQIDNGIVYLTNKEDPRITVLLDCHGISPFRFPMQMM 316
           VRLGLACSSLAPSDRPRFGQAVVSQIDNGIVYLTNKEDPRITVLLDCHGISPFRFPMQMM
Sbjct: 257 VRLGLACSSLAPSDRPRFGQAVVSQIDNGIVYLTNKEDPRITVLLDCHGISPFRFPMQMM 316

Query: 317 RSFITIVQENYPNRLGVLFIVRLPPVVRVIAQTLIQVLKPSTKQKLRFEGESYKKTLAEF 376
           RSFITIVQENYPNRLGVLFIVRLPPVVRVIAQTLIQVLKPSTKQKLRFEGESYKKTLAEF
Sbjct: 317 RSFITIVQENYPNRLGVLFIVRLPPVVRVIAQTLIQVLKPSTKQKLRFEGESYKKTLAEF 376

Query: 377 LQIVPTFLGGKCSCPQCEKPRNISVIQAGEGSKSQPRQITIDDGSPVASMNFDEAELPSP 436
           LQIVPTFLGGKCSCPQCEKPRNISVIQAGEGSKSQPRQITIDDGSPVASMNFDEAELPSP
Sbjct: 377 LQIVPTFLGGKCSCPQCEKPRNISVIQAGEGSKSQPRQITIDDGSPVASMNFDEAELPSP 436

Query: 437 YSCENAIRAAIIGVLMLWVFIAFLAGMNDPESISSHAP 474
           YSCENAIRAAIIGVLMLWVFIAFLAGMNDPESISSHAP
Sbjct: 437 YSCENAIRAAIIGVLMLWVFIAFLAGMNDPESISSHAP 474



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,939,501
Number of extensions: 656851
Number of successful extensions: 2009
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2011
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 369
Effective length of database: 11,553,331
Effective search space: 4263179139
Effective search space used: 4263179139
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 158 (65.5 bits)