Os03g0820600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Actin-depolymerizing factor 3 (ADF 3) (ZmABP3) (ZmADF3).
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Os03g0820600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Actin-depolymerizing factor 3 (ADF 3) (ZmABP3) (ZmADF3).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.16 | 0.177 | 14.8 | -0.569 | 0.208 | 0.149 | -0.0938 | -1.09 | -0.0239 | 22.8 | 19.1 | 2021 | -- | -- |
| 15.3 | 0.182 | 14.7 | -0.484 | 0.208 | 0.452 | -0.265 | -- | -0.0306 | 22.3 | 18.4 | 3095 | -- | -- |
| 14.19 | 0.175 | 14.8 | -0.569 | 0.208 | 0.144 | -- | -1.08 | -0.0254 | 22.9 | 19.13 | 2057 | -- | -- |
| 15.34 | 0.182 | 14.7 | -0.477 | 0.206 | 0.482 | -- | -- | -0.0142 | 22.6 | 18.4 | 3249 | -- | -- |
| 16.76 | 0.191 | 14.8 | -0.578 | -- | 0.193 | -- | -1.04 | -0.0268 | -- | 18.9 | 2230 | -- | -- |
| 18.24 | 0.2 | 14.7 | -0.277 | 0.213 | -- | -0.152 | -- | 0.0732 | 22.8 | -- | -- | -- | -- |
| 18.33 | 0.201 | 14.7 | -0.271 | 0.214 | -- | -- | -- | 0.0735 | 22.9 | -- | -- | -- | -- |
| 17.91 | 0.197 | 14.7 | -0.488 | -- | 0.461 | -- | -- | -0.00741 | -- | 18.5 | 2290 | -- | -- |
| 19.78 | 0.208 | 14.7 | -- | 0.225 | 0.17 | -- | -- | 0.0948 | 22.9 | 18.4 | 3249 | -- | -- |
| 21.16 | 0.215 | 14.7 | -0.266 | -- | -- | -- | -- | 0.075 | -- | -- | -- | -- | -- |
| 20.27 | 0.211 | 14.7 | -- | 0.211 | -- | -- | -- | 0.104 | 22.8 | -- | -- | -- | -- |
| 22.29 | 0.22 | 14.7 | -- | -- | 0.225 | -- | -- | 0.0867 | -- | 18 | 2110 | -- | -- |
| 23.03 | 0.224 | 14.7 | -- | -- | -- | -- | -- | 0.105 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 12.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 11 | 13.02 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 6 |
| 24 | 13.13 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 36 | 13.19 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 38 | 13.20 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 39 | 13.22 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 40 | 13.22 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 9 |
| 45 | 13.23 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 54 | 13.27 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 58 | 13.29 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 64 | 13.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 10 |
| 65 | 13.30 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 72 | 13.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 80 | 13.31 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 14 |
| 114 | 13.37 | humidity | 90 | 14400 | > th | dose dependent | sin | 7 | NA |
| 223 | 13.55 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 236 | 13.57 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 255 | 13.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 266 | 13.60 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 274 | 13.61 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 293 | 13.63 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 294 | 13.63 | humidity | 50 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 306 | 13.64 | humidity | 50 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 310 | 13.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 326 | 13.66 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 347 | 13.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 349 | 13.68 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 363 | 13.70 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 379 | 13.71 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 403 | 13.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 415 | 13.74 | humidity | 50 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 418 | 13.74 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 5 |
| 424 | 13.74 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 16 |
| 440 | 13.76 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 463 | 13.79 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 563 | 13.87 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 565 | 13.87 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 602 | 13.90 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 603 | 13.90 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 650 | 13.94 | humidity | 70 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 658 | 13.95 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 11 |
| 670 | 13.95 | temperature | 25 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 672 | 13.95 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 680 | 13.95 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 691 | 13.96 | wind | 5 | 43200 | < th | dose dependent | rect. | 13 | 2 |
| 695 | 13.97 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 6 |
| 718 | 13.98 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 6 |
| 726 | 13.98 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 736 | 13.99 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 755 | 13.99 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 14 |
| 791 | 14.00 | humidity | 70 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 796 | 14.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 810 | 14.00 | temperature | 25 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 815 | 14.01 | wind | 1 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 829 | 14.01 | radiation | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 848 | 14.01 | temperature | 25 | 43200 | < th | dose dependent | rect. | 20 | 13 |
| 882 | 14.02 | temperature | 25 | 43200 | < th | dose dependent | sin | 7 | NA |
| 890 | 14.02 | temperature | 25 | 43200 | < th | dose dependent | sin | 5 | NA |
| 893 | 14.02 | temperature | 10 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 894 | 14.02 | temperature | 25 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 918 | 14.02 | temperature | 25 | 43200 | < th | dose dependent | rect. | 3 | 8 |
| 930 | 14.02 | temperature | 25 | 43200 | < th | dose dependent | rect. | 23 | 11 |
| 996 | 14.03 | temperature | 25 | 43200 | < th | dose dependent | no | NA | NA |
| 999 | 14.03 | temperature | 10 | 43200 | > th | dose dependent | rect. | 2 | 1 |