Os03g0820100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Auxin-resistance protein AXR1.
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Os03g0820100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Auxin-resistance protein AXR1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.14 | 0.258 | 9.9 | -1.11 | 0.137 | 0.484 | 0.06 | -1.16 | -0.302 | 12.8 | 11.07 | 3826 | -- | -- |
| 31.05 | 0.26 | 9.88 | -0.981 | 0.113 | 0.559 | 0.142 | -- | -0.316 | 12.6 | 8.952 | 11467 | -- | -- |
| 30.15 | 0.256 | 9.91 | -1.11 | 0.137 | 0.482 | -- | -1.17 | -0.302 | 12.9 | 10.33 | 3823 | -- | -- |
| 31.1 | 0.26 | 9.88 | -0.977 | 0.117 | 0.558 | -- | -- | -0.315 | 13.4 | 8.354 | 11460 | -- | -- |
| 30.99 | 0.259 | 9.91 | -1.1 | -- | 0.471 | -- | -1.06 | -0.298 | -- | 9.125 | 4559 | -- | -- |
| 36.12 | 0.282 | 9.84 | -0.625 | 0.0987 | -- | 0.116 | -- | -0.13 | 12.7 | -- | -- | -- | -- |
| 36.17 | 0.282 | 9.84 | -0.62 | 0.0994 | -- | -- | -- | -0.129 | 13.2 | -- | -- | -- | -- |
| 31.68 | 0.263 | 9.86 | -0.732 | -- | 0.595 | -- | -- | -0.21 | -- | 9.125 | 4559 | -- | -- |
| 44.98 | 0.314 | 9.84 | -- | 0.0272 | 0.354 | -- | -- | -0.102 | 9.34 | 8.354 | 11460 | -- | -- |
| 36.78 | 0.283 | 9.84 | -0.624 | -- | -- | -- | -- | -0.131 | -- | -- | -- | -- | -- |
| 46.31 | 0.318 | 9.83 | -- | 0.11 | -- | -- | -- | -0.0599 | 13.4 | -- | -- | -- | -- |
| 42.59 | 0.304 | 9.8 | -- | -- | -0.318 | -- | -- | 0.048 | -- | 18.1 | 47520 | -- | -- |
| 47.06 | 0.32 | 9.83 | -- | -- | -- | -- | -- | -0.0618 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.49 | temperature | 10 | 90 | > th | dose dependent | rect. | 7 | 22 |
| 3 | 26.60 | temperature | 10 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 40 | 28.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 18 |
| 51 | 28.38 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 14 |
| 52 | 28.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 76 | 28.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 122 | 28.99 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 125 | 29.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 160 | 29.20 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 169 | 29.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 176 | 29.29 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 182 | 29.32 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 186 | 29.34 | humidity | 70 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 196 | 29.38 | humidity | 80 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 201 | 29.40 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 207 | 29.44 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 216 | 29.46 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 3 |
| 222 | 29.47 | humidity | 80 | 14400 | < th | dose independent | rect. | 6 | 13 |
| 225 | 29.48 | humidity | 80 | 14400 | > th | dose independent | sin | 20 | NA |
| 226 | 29.48 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 234 | 29.49 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 13 |
| 240 | 29.50 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 2 |
| 246 | 29.50 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 251 | 29.51 | humidity | 80 | 14400 | < th | dose independent | sin | 20 | NA |
| 256 | 29.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 261 | 29.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 272 | 29.53 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 302 | 29.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 4 |
| 397 | 29.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 23 |
| 451 | 29.66 | humidity | 80 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 460 | 29.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 11 |
| 482 | 29.68 | humidity | 70 | 14400 | > th | dose dependent | rect. | 11 | 15 |
| 516 | 29.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 517 | 29.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 537 | 29.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 20 |
| 549 | 29.73 | humidity | 80 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 556 | 29.73 | humidity | 80 | 14400 | > th | dose independent | rect. | 22 | 22 |
| 586 | 29.75 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 606 | 29.76 | humidity | 70 | 14400 | > th | dose dependent | sin | 17 | NA |
| 616 | 29.77 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 720 | 29.80 | humidity | 70 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 740 | 29.81 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 9 |
| 803 | 29.83 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 804 | 29.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 4 |
| 843 | 29.84 | radiation | 20 | 4320 | > th | dose dependent | rect. | 16 | 16 |
| 897 | 29.85 | humidity | 70 | 14400 | > th | dose dependent | rect. | 20 | 23 |
| 907 | 29.86 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 22 |
| 918 | 29.86 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 932 | 29.87 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 974 | 29.88 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 7 | 22 |
| 976 | 29.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 989 | 29.89 | humidity | 70 | 14400 | > th | dose dependent | no | NA | NA |
| 991 | 29.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 19 | 2 |
| 992 | 29.89 | temperature | 30 | 4320 | < th | dose dependent | rect. | 19 | 2 |