BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0820100 Os03g0820100|AK111534
(531 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0820100 Similar to Auxin-resistance protein AXR1 1008 0.0
>Os03g0820100 Similar to Auxin-resistance protein AXR1
Length = 531
Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/521 (94%), Positives = 491/521 (94%)
Query: 11 EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKNXXXXXXXXXXXXXXXXXEQ 70
EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKN EQ
Sbjct: 11 EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKNLVLGGVGSVTVVDGSKVEQ 70
Query: 71 SDMGNNFLLDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVI 130
SDMGNNFLLDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVI
Sbjct: 71 SDMGNNFLLDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVI 130
Query: 131 ATQLPERSLLKLDDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHN 190
ATQLPERSLLKLDDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHN
Sbjct: 131 ATQLPERSLLKLDDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHN 190
Query: 191 PWVELKQFAKSIDINDKDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALI 250
PWVELKQFAKSIDINDKDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALI
Sbjct: 191 PWVELKQFAKSIDINDKDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALI 250
Query: 251 REYMLNLDEENYKEAVESSYKVSVTPGISDEIRQIIXXXXXXXXXXXXXFWVLVAALKEF 310
REYMLNLDEENYKEAVESSYKVSVTPGISDEIRQII FWVLVAALKEF
Sbjct: 251 REYMLNLDEENYKEAVESSYKVSVTPGISDEIRQIIDDSSAEVNSSSSDFWVLVAALKEF 310
Query: 311 IANEGNGELPLEGTIPDMTSLTEYYVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPDS 370
IANEGNGELPLEGTIPDMTSLTEYYVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPDS
Sbjct: 311 IANEGNGELPLEGTIPDMTSLTEYYVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPDS 370
Query: 371 ISRAYIKTFCKNARKLRVCRYRSMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVDR 430
ISRAYIKTFCKNARKLRVCRYRSMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVDR
Sbjct: 371 ISRAYIKTFCKNARKLRVCRYRSMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVDR 430
Query: 431 LAANYNRCPGIFESEIDEDVPRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHPV 490
LAANYNRCPGIFESEIDEDVPRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHPV
Sbjct: 431 LAANYNRCPGIFESEIDEDVPRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHPV 490
Query: 491 AAFIGGVASQEVIKLVTKQFVPLLGTFIFNGIDHKSQVLAL 531
AAFIGGVASQEVIKLVTKQFVPLLGTFIFNGIDHKSQVLAL
Sbjct: 491 AAFIGGVASQEVIKLVTKQFVPLLGTFIFNGIDHKSQVLAL 531
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,377,164
Number of extensions: 576708
Number of successful extensions: 1382
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1385
Number of HSP's successfully gapped: 2
Length of query: 531
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 425
Effective length of database: 11,501,117
Effective search space: 4887974725
Effective search space used: 4887974725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)