BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0820100 Os03g0820100|AK111534
(531 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05180.1 | chr1:1498357-1501775 REVERSE LENGTH=541 709 0.0
AT2G32410.1 | chr2:13757702-13760862 FORWARD LENGTH=524 684 0.0
AT3G25880.1 | chr3:9469713-9470033 REVERSE LENGTH=70 53 3e-07
>AT1G05180.1 | chr1:1498357-1501775 REVERSE LENGTH=541
Length = 540
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/522 (63%), Positives = 414/522 (79%), Gaps = 1/522 (0%)
Query: 11 EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKNXXXXXXXXXXXXXXXXXEQ 70
EPKTKYDRQLRIWG+ GQAALE+ASICLL CGPTG+EA+KN +
Sbjct: 19 EPKTKYDRQLRIWGEVGQAALEEASICLLNCGPTGSEALKNLVLGGVGSITVVDGSKVQF 78
Query: 71 SDMGNNFLLDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVI 130
D+GNNF++DA+ +GQS+AKSVC+FLQELND+VNAKF+EE+P LI TNPSFFSQFT+VI
Sbjct: 79 GDLGNNFMVDAKSVGQSKAKSVCAFLQELNDSVNAKFIEENPDTLITTNPSFFSQFTLVI 138
Query: 131 ATQLPERSLLKLDDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHN 190
ATQL E S+LKLD ICR AN+ LV RSYGL G VRISVKEH +I+SKPDHFLDDLRL+N
Sbjct: 139 ATQLVEDSMLKLDRICRDANVKLVLVRSYGLAGFVRISVKEHPIIDSKPDHFLDDLRLNN 198
Query: 191 PWVELKQFAKSIDINDKDPVV-HKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKAL 249
PW ELK F ++ID+N +P HKH PY+VILV++AE+WA +H G LPSTR+EK EFK L
Sbjct: 199 PWPELKSFVETIDLNVSEPAAAHKHIPYVVILVKMAEEWAQSHSGNLPSTREEKKEFKDL 258
Query: 250 IREYMLNLDEENYKEAVESSYKVSVTPGISDEIRQIIXXXXXXXXXXXXXFWVLVAALKE 309
++ M++ DE+NYKEA+E+++KV GIS E++++I FWV+VAALKE
Sbjct: 259 VKSKMVSTDEDNYKEAIEAAFKVFAPRGISSEVQKLINDSCAEVNSNSSAFWVMVAALKE 318
Query: 310 FIANEGNGELPLEGTIPDMTSLTEYYVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPD 369
F+ NEG GE PLEG+IPDMTS TE+Y++LQKIY AKAE+D L +E VK+ILK+I RDP
Sbjct: 319 FVLNEGGGEAPLEGSIPDMTSSTEHYINLQKIYLAKAEADFLVIEERVKNILKKIGRDPS 378
Query: 370 SISRAYIKTFCKNARKLRVCRYRSMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVD 429
SI + IK+FCKNARKL++CRYR +E+EF +P ++E+Q Y DEDY AM FY+LLRA D
Sbjct: 379 SIPKPTIKSFCKNARKLKLCRYRMVEDEFRNPSVTEIQKYLADEDYSGAMGFYILLRAAD 438
Query: 430 RLAANYNRCPGIFESEIDEDVPRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHP 489
R AANYN+ PG F+ +DED+ RLKT A+S+++++G NG+ L +DLI EMCRFG +EIH
Sbjct: 439 RFAANYNKFPGQFDGGMDEDISRLKTTALSLLTDLGCNGSVLPDDLIHEMCRFGASEIHV 498
Query: 490 VAAFIGGVASQEVIKLVTKQFVPLLGTFIFNGIDHKSQVLAL 531
V+AF+GG+ASQEVIKLVTKQFVP+LGT+IFNGIDHKSQ+L L
Sbjct: 499 VSAFVGGIASQEVIKLVTKQFVPMLGTYIFNGIDHKSQLLKL 540
>AT2G32410.1 | chr2:13757702-13760862 FORWARD LENGTH=524
Length = 523
Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/521 (61%), Positives = 399/521 (76%)
Query: 11 EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKNXXXXXXXXXXXXXXXXXEQ 70
EPKTKYDRQLRIWG+ GQ+ALE ASICLL CGPTG+EA+KN E
Sbjct: 3 EPKTKYDRQLRIWGELGQSALETASICLLNCGPTGSEALKNLVIGGIGSITIVDGSKVEI 62
Query: 71 SDMGNNFLLDAECLGQSRAKSVCSFLQELNDAVNAKFVEESPLALIDTNPSFFSQFTVVI 130
D+GNNF++DA+ +GQSRAK+VC FLQELND+V A FVEE+P LI T+PSFFSQFT+VI
Sbjct: 63 GDLGNNFMVDAKSVGQSRAKTVCGFLQELNDSVKANFVEENPDTLISTDPSFFSQFTLVI 122
Query: 131 ATQLPERSLLKLDDICRKANIVLVAARSYGLTGLVRISVKEHNVIESKPDHFLDDLRLHN 190
ATQL E S++KLD ICR+AN++LV ARSYGLTG VRISVKEH IE+KPDH LDDLRL++
Sbjct: 123 ATQLVEDSMVKLDRICREANVMLVLARSYGLTGFVRISVKEHTAIETKPDHSLDDLRLNS 182
Query: 191 PWVELKQFAKSIDINDKDPVVHKHTPYIVILVRLAEKWADAHDGRLPSTRQEKNEFKALI 250
PW ELK + +SID+N ++P HKH PY+VILV++AE+WA H G LPSTR+EKNEFK L+
Sbjct: 183 PWPELKSYVESIDLNVEEPAAHKHIPYVVILVKVAEEWAQHHSGNLPSTREEKNEFKDLV 242
Query: 251 REYMLNLDEENYKEAVESSYKVSVTPGISDEIRQIIXXXXXXXXXXXXXFWVLVAALKEF 310
+ M++ DEENYKEA+ +++KV GIS EI+ I FWV+VAALKEF
Sbjct: 243 KSKMVSADEENYKEALLAAFKVFAPTGISQEIQDINHDSCAEVGSNSSDFWVMVAALKEF 302
Query: 311 IANEGNGELPLEGTIPDMTSLTEYYVSLQKIYQAKAESDCLALEHHVKDILKRIDRDPDS 370
I+NEG GE+PLEG++PDM S TE+Y++LQKIY +KAE+D L++E VK IL ++ +DP S
Sbjct: 303 ISNEGGGEVPLEGSMPDMISSTEHYINLQKIYHSKAEADFLSMEQRVKSILVKVGQDPSS 362
Query: 371 ISRAYIKTFCKNARKLRVCRYRSMEEEFSSPVLSEVQIYFTDEDYCFAMNFYVLLRAVDR 430
IS+ IK+FCKNARKL+VCRYR++E+EF SP +E+ Y DE+Y A+ FY+LLRAVDR
Sbjct: 363 ISKPTIKSFCKNARKLKVCRYRTIEDEFKSPSTTELHKYLADENYSGAIGFYILLRAVDR 422
Query: 431 LAANYNRCPGIFESEIDEDVPRLKTAAVSVMSEMGMNGAPLSEDLITEMCRFGGAEIHPV 490
A Y + PG F+ DED +LKT A+S++SEMG +G L E+L EMCRFG AEIH V
Sbjct: 423 FAGTYKKFPGQFDGSTDEDASQLKTIALSLLSEMGCDGYELQEELYNEMCRFGAAEIHVV 482
Query: 491 AAFIGGVASQEVIKLVTKQFVPLLGTFIFNGIDHKSQVLAL 531
AA IGG+ SQEVIKL+TKQFVP GTFIFNGIDHKSQ L L
Sbjct: 483 AALIGGITSQEVIKLITKQFVPKRGTFIFNGIDHKSQSLTL 523
>AT3G25880.1 | chr3:9469713-9470033 REVERSE LENGTH=70
Length = 69
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 26/41 (63%), Positives = 31/41 (75%), Gaps = 3/41 (7%)
Query: 11 EPKTKYDRQLRIWGDQGQAALEKASICLLTCGPTGTEAMKN 51
EPK KYDRQL ++ QG LE+ASICLL CGP G+ A+KN
Sbjct: 3 EPKAKYDRQL-MYTIQG--TLEEASICLLNCGPIGSNALKN 40
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,275,217
Number of extensions: 399564
Number of successful extensions: 974
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 970
Number of HSP's successfully gapped: 3
Length of query: 531
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 428
Effective length of database: 8,282,721
Effective search space: 3545004588
Effective search space used: 3545004588
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)