FiT-DB / Search/ Help/ Sample detail

Os03g0818100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Histidine acid phosphatase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.12 (0.0145) R2 : 0.639
β1 : -- (--) R2dD : -- R2D : --
β2 : 1 (0.0357) R2dC : 0.627 R2C : 0.62
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.133 (0.0304) R2dN8 : 0.0195 R2N8 : 0.0123
σ : 0.273
deviance : 33.96
__
_____
C
peak time of C : 9.31
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.78 0.261 9.11 0.143 0.957 0.391 -0.0482 -0.626 0.208 9.8 91.73 236 -- --
31.24 0.26 9.11 0.134 0.958 0.411 -0.0748 -- 0.199 9.77 92.99 198 -- --
30.7 0.258 9.11 0.139 0.971 0.413 -- -0.558 0.202 9.73 92.73 199 -- --
31.26 0.26 9.11 0.13 0.958 0.404 -- -- 0.196 9.77 92.98 196 -- --
64.28 0.373 9.16 0.203 -- 0.88 -- -0.863 0.249 -- 79.63 712 -- --
33.29 0.27 9.12 0.16 1 -- -0.028 -- 0.151 9.33 -- -- -- --
33.3 0.27 9.12 0.159 1 -- -- -- 0.151 9.33 -- -- -- --
63.36 0.371 9.13 0.12 -- 1.02 -- -- 0.293 -- 78.46 732 -- --
31.69 0.262 9.11 -- 0.96 0.414 -- -- 0.184 9.78 93 178 -- --
92 0.448 9.14 0.154 -- -- -- -- 0.155 -- -- -- -- --
33.96 0.273 9.12 -- 1 -- -- -- 0.133 9.31 -- -- -- --
63.16 0.37 9.12 -- -- 1.01 -- -- 0.244 -- 77.73 749 -- --
92.62 0.449 9.15 -- -- -- -- -- 0.137 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.73 temperature 15.0 270 > th dose dependent rect. 6 5
2 28.76 temperature 15.0 270 > th dose dependent rect. 7 3
20 29.25 humidity 60.0 270 > th dose independent rect. 6 5
25 29.35 atmosphere 1010.0 90 < th dose independent rect. 7 5
27 29.39 atmosphere 1010.0 10 < th dose independent rect. 7 6
30 29.42 humidity 60.0 270 > th dose independent rect. 7 3
33 29.45 temperature 20.0 270 > th dose independent rect. 7 3
35 29.45 radiation 40.0 10 < th dose independent rect. 12 19
40 29.48 humidity 50.0 10 > th dose independent rect. 7 6
45 29.52 temperature 10.0 270 > th dose dependent rect. 6 18
47 29.53 atmosphere 1010.0 270 < th dose independent rect. 7 2
52 29.54 wind 5.0 270 < th dose independent rect. 6 5
59 29.56 atmosphere 1015.0 90 < th dose dependent rect. 7 6
63 29.58 radiation 40.0 270 < th dose independent rect. 7 2
75 29.62 temperature 20.0 270 > th dose independent rect. 6 18
77 29.63 wind 5.0 270 < th dose independent rect. 7 2
84 29.66 atmosphere 1000.0 270 > th dose independent rect. 11 5
97 29.70 atmosphere 995.0 270 > th dose independent rect. 11 19
107 29.74 temperature 10.0 270 > th dose dependent rect. 16 19
109 29.75 atmosphere 995.0 90 > th dose dependent rect. 12 19
111 29.76 temperature 20.0 10 > th dose independent rect. 7 6
115 29.77 wind 9.0 270 < th dose dependent rect. 7 2
116 29.77 atmosphere 995.0 270 > th dose dependent rect. 11 5
119 29.78 wind 9.0 270 < th dose dependent rect. 6 5
120 29.79 temperature 20.0 270 > th dose independent rect. 15 10
123 29.80 radiation 1.0 270 > th dose independent rect. 7 2
129 29.80 atmosphere 1015.0 270 < th dose dependent rect. 7 2
143 29.83 precipitation 0.1 270 < th dose independent rect. 7 2
144 29.83 precipitation 0.1 90 < th dose independent rect. 13 18
146 29.83 precipitation 0.1 270 < th dose dependent rect. 7 2
148 29.83 precipitation 0.1 90 < th dose dependent rect. 13 18
150 29.84 temperature 10.0 270 > th dose independent rect. 7 2
153 29.84 atmosphere 995.0 270 > th dose independent rect. 7 2
160 29.84 precipitation 0.1 270 < th dose independent rect. 6 5
162 29.84 atmosphere 995.0 90 > th dose independent rect. 13 18
163 29.84 temperature 10.0 270 > th dose independent rect. 9 22
164 29.84 precipitation 0.1 270 < th dose dependent rect. 6 5
171 29.86 atmosphere 995.0 270 > th dose independent rect. 6 5
177 29.86 temperature 10.0 90 > th dose independent rect. 13 18
178 29.86 temperature 10.0 270 > th dose independent rect. 11 19
184 29.87 wind 9.0 90 < th dose independent rect. 13 18
188 29.88 atmosphere 995.0 270 > th dose independent rect. 1 14
211 29.91 radiation 40.0 270 < th dose independent rect. 15 10
212 29.91 wind 9.0 270 < th dose independent rect. 11 19
219 29.92 radiation 1.0 270 > th dose independent rect. 18 17
232 29.93 humidity 50.0 270 > th dose dependent rect. 7 2
236 29.94 wind 1.0 90 > th dose independent rect. 7 6
237 29.94 temperature 10.0 270 > th dose independent rect. 15 10
238 29.94 temperature 10.0 270 > th dose independent rect. 1 14
239 29.94 atmosphere 1015.0 270 < th dose independent rect. 1 14
241 29.94 atmosphere 1015.0 90 < th dose dependent rect. 7 18
246 29.96 wind 1.0 270 > th dose independent rect. 7 3
248 29.96 atmosphere 1015.0 270 < th dose independent rect. 15 10
256 29.97 atmosphere 995.0 270 > th dose dependent rect. 10 8
258 29.98 wind 9.0 270 < th dose independent rect. 15 10
267 29.99 wind 9.0 270 < th dose independent rect. 9 22
286 30.01 humidity 90.0 10 < th dose independent rect. 7 6
287 30.01 wind 9.0 10 < th dose independent rect. 13 18
295 30.02 precipitation 0.1 270 < th dose independent rect. 1 14
299 30.02 precipitation 0.1 270 < th dose dependent rect. 1 14
305 30.03 temperature 10.0 1440 > th dose independent rect. 8 6
309 30.03 atmosphere 995.0 1440 > th dose independent rect. 8 6
327 30.03 temperature 10.0 1440 > th dose independent rect. 14 18
364 30.07 radiation 40.0 270 < th dose independent rect. 6 4
366 30.07 radiation 1.0 10 > th dose independent rect. 7 6
373 30.08 precipitation 0.1 270 < th dose independent rect. 15 10
378 30.08 precipitation 0.1 270 < th dose dependent rect. 15 10
395 30.10 temperature 30.0 270 < th dose independent rect. 7 2
407 30.11 wind 9.0 270 < th dose independent rect. 1 14
460 30.16 radiation 1.0 10 > th dose independent rect. 12 19
465 30.16 atmosphere 1015.0 90 < th dose dependent rect. 7 20
474 30.18 atmosphere 1000.0 90 > th dose independent rect. 3 14
515 30.21 humidity 90.0 270 > th dose dependent rect. 8 21
561 30.27 atmosphere 1010.0 90 < th dose independent rect. 7 20
606 30.30 humidity 50.0 30 > th dose independent rect. 7 20
679 30.37 atmosphere 1010.0 90 < th dose independent rect. 7 18
685 30.37 temperature 10.0 270 > th dose dependent rect. 16 9
688 30.38 radiation 1.0 270 > th dose independent rect. 11 5
695 30.38 radiation 40.0 270 < th dose dependent rect. 7 1
708 30.39 atmosphere 1015.0 270 < th dose independent rect. 16 19
709 30.39 atmosphere 1010.0 10 < th dose independent rect. 7 20
751 30.42 wind 1.0 270 > th dose independent rect. 11 19
754 30.42 radiation 10.0 10 < th dose dependent sin 14 NA
818 30.45 temperature 30.0 30 < th dose independent rect. 13 18
852 30.47 humidity 90.0 270 > th dose dependent rect. 16 13
904 30.50 humidity 60.0 90 > th dose independent rect. 12 19
921 30.51 atmosphere 1000.0 270 > th dose independent rect. 13 1
958 30.52 atmosphere 1015.0 270 < th dose independent rect. 6 15
983 30.53 wind 1.0 270 > th dose independent rect. 15 10
989 30.53 wind 5.0 270 < th dose independent rect. 5 20
996 30.54 radiation 1.0 270 > th dose independent sin 8 NA
999 30.54 temperature 30.0 270 < th dose independent rect. 1 14