BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0818100 Os03g0818100|AK121701
         (519 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09870.1  | chr1:3205817-3208444 FORWARD LENGTH=488            548   e-156

>AT1G09870.1 | chr1:3205817-3208444 FORWARD LENGTH=488
          Length = 487

 Score =  548 bits (1413), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 264/471 (56%), Positives = 342/471 (72%), Gaps = 18/471 (3%)

Query: 36  FDVRRHLSTVTRYDVARG-SNSVSSAPSMSDECRVIHLNLVARHGTRAPTKKRIKELDRL 94
           FDVR HLSTVTRY  ++  + ++    ++  EC  IHLNLVARHGTR+PTKKR++EL+ L
Sbjct: 23  FDVRHHLSTVTRYSTSKDVTQNLIEGSNVPSECTPIHLNLVARHGTRSPTKKRLRELESL 82

Query: 95  AVRLKALI--DEAKQGPESDSLKKIPSWMKGWESPWKGRVKXXXXXXXXXXXXYNLAIRV 152
           A R K L+   EA++ P      KIP W+  W+SPW+G+VK            Y L IRV
Sbjct: 83  AGRFKELVRDAEARKLPSD----KIPGWLGQWKSPWEGKVKGGELIRQGEDELYQLGIRV 138

Query: 153 KERFQGLFDEEYHPDVYSIRATQVPRASASAVAFXXXXXXXXXXXXPVKNRAFSVLSESR 212
           +ERF  LF+E+YHPDVY+IRATQ+PRASASAVAF            P +NRAF+V SE+R
Sbjct: 139 RERFPSLFEEDYHPDVYTIRATQIPRASASAVAFGMGLFSEKGNLGPGRNRAFAVTSENR 198

Query: 213 ASDICLRFFDSCETYKDYRKRKEPDVEKQKEPILEHVTSALVNRYHLNFTPKDVSSLWFL 272
           ASD  LRFF+ C+ YK YRK KEP V+K KEP+L  +T+++  RY L FT +D+SSLWFL
Sbjct: 199 ASDTKLRFFECCQNYKSYRKAKEPAVDKLKEPVLNKITASVAKRYDLKFTKQDISSLWFL 258

Query: 273 CKQEASLMNITNQACQLFNEAEVYFLEWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSM 332
           CKQEASL+N+TNQ+C+LF  +EV  LEWTDDLE F+LKGYG S+NY+MG+PLL+DV+ SM
Sbjct: 259 CKQEASLLNVTNQSCELFTPSEVALLEWTDDLEVFLLKGYGNSLNYKMGVPLLEDVLHSM 318

Query: 333 EEAIVAKEENHPDGTYEKARLRFAHAETVVPFSCLLGLFLEGSDFAKIQREESLDIPPVP 392
           EEAI A+EE  P G+YEKARLRFAHAET+VPFSCLLGLFL+GS+F KIQ+E+ L++PP P
Sbjct: 319 EEAIKAREEKLPPGSYEKARLRFAHAETIVPFSCLLGLFLDGSEFEKIQKEKPLELPPQP 378

Query: 393 PQGRNWKGSVVAPFAGNNMLALYQCPGKTDGGKISRDQKSSYFVQVIHNEAPVSMPGCGN 452
           P+ R+++GS +APF GNN+L LY CP ++            YFVQV+HNE P+++PGC  
Sbjct: 379 PKTRDFRGSTMAPFGGNNILVLYSCPAESS---------PKYFVQVLHNEHPIAVPGCDG 429

Query: 453 KDFCPFEEFKEKIVEPHLKHDYDALCK--IRPVAREEPSSFSSRMSNFFLG 501
           KDFCP E+FK K+V PHLKH +D LC   +  + ++  SS  S +S++  G
Sbjct: 430 KDFCPLEDFKAKVVTPHLKHAFDNLCNADLNDLKQKPASSKLSILSSWLFG 480



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,416,904
Number of extensions: 433700
Number of successful extensions: 1039
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1036
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 416
Effective length of database: 8,282,721
Effective search space: 3445611936
Effective search space used: 3445611936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)