BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0818100 Os03g0818100|AK121701
         (519 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0818100  Histidine acid phosphatase family protein           950   0.0  

>Os03g0818100 Histidine acid phosphatase family protein
          Length = 519

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 460/484 (95%), Positives = 460/484 (95%)

Query: 36  FDVRRHLSTVTRYDVARGSNSVSSAPSMSDECRVIHLNLVARHGTRAPTKKRIKELDRLA 95
           FDVRRHLSTVTRYDVARGSNSVSSAPSMSDECRVIHLNLVARHGTRAPTKKRIKELDRLA
Sbjct: 36  FDVRRHLSTVTRYDVARGSNSVSSAPSMSDECRVIHLNLVARHGTRAPTKKRIKELDRLA 95

Query: 96  VRLKALIDEAKQGPESDSLKKIPSWMKGWESPWKGRVKXXXXXXXXXXXXYNLAIRVKER 155
           VRLKALIDEAKQGPESDSLKKIPSWMKGWESPWKGRVK            YNLAIRVKER
Sbjct: 96  VRLKALIDEAKQGPESDSLKKIPSWMKGWESPWKGRVKGGELVSEGEEELYNLAIRVKER 155

Query: 156 FQGLFDEEYHPDVYSIRATQVPRASASAVAFXXXXXXXXXXXXPVKNRAFSVLSESRASD 215
           FQGLFDEEYHPDVYSIRATQVPRASASAVAF            PVKNRAFSVLSESRASD
Sbjct: 156 FQGLFDEEYHPDVYSIRATQVPRASASAVAFGLGLLSGKGKLGPVKNRAFSVLSESRASD 215

Query: 216 ICLRFFDSCETYKDYRKRKEPDVEKQKEPILEHVTSALVNRYHLNFTPKDVSSLWFLCKQ 275
           ICLRFFDSCETYKDYRKRKEPDVEKQKEPILEHVTSALVNRYHLNFTPKDVSSLWFLCKQ
Sbjct: 216 ICLRFFDSCETYKDYRKRKEPDVEKQKEPILEHVTSALVNRYHLNFTPKDVSSLWFLCKQ 275

Query: 276 EASLMNITNQACQLFNEAEVYFLEWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSMEEA 335
           EASLMNITNQACQLFNEAEVYFLEWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSMEEA
Sbjct: 276 EASLMNITNQACQLFNEAEVYFLEWTDDLEGFVLKGYGESINYRMGLPLLKDVVQSMEEA 335

Query: 336 IVAKEENHPDGTYEKARLRFAHAETVVPFSCLLGLFLEGSDFAKIQREESLDIPPVPPQG 395
           IVAKEENHPDGTYEKARLRFAHAETVVPFSCLLGLFLEGSDFAKIQREESLDIPPVPPQG
Sbjct: 336 IVAKEENHPDGTYEKARLRFAHAETVVPFSCLLGLFLEGSDFAKIQREESLDIPPVPPQG 395

Query: 396 RNWKGSVVAPFAGNNMLALYQCPGKTDGGKISRDQKSSYFVQVIHNEAPVSMPGCGNKDF 455
           RNWKGSVVAPFAGNNMLALYQCPGKTDGGKISRDQKSSYFVQVIHNEAPVSMPGCGNKDF
Sbjct: 396 RNWKGSVVAPFAGNNMLALYQCPGKTDGGKISRDQKSSYFVQVIHNEAPVSMPGCGNKDF 455

Query: 456 CPFEEFKEKIVEPHLKHDYDALCKIRPVAREEPSSFSSRMSNFFLGLFSQKGYRVSAQDV 515
           CPFEEFKEKIVEPHLKHDYDALCKIRPVAREEPSSFSSRMSNFFLGLFSQKGYRVSAQDV
Sbjct: 456 CPFEEFKEKIVEPHLKHDYDALCKIRPVAREEPSSFSSRMSNFFLGLFSQKGYRVSAQDV 515

Query: 516 KSEL 519
           KSEL
Sbjct: 516 KSEL 519



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,038,987
Number of extensions: 651873
Number of successful extensions: 1492
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1492
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 414
Effective length of database: 11,553,331
Effective search space: 4783079034
Effective search space used: 4783079034
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)