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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0816500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 2OG-Fe(II) oxygenase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.33 (0.0413) R2 : 0.423
β1 : -2.91 (0.21) R2dD : 0.655 R2D : -0.168
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.82 (0.119) R2dE : 0.397 R2E : -0.00141
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.11 (0.602) R2dD*E : 0.154 R2D*E : -0.35
γ1 : -0.604 (0.0867) R2dN8 : 0.112 R2N8 : -0.0805
σ : 0.666
deviance : 204.7
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C
peak time of C : --
E
wheather : temperature
threshold : 22.88
memory length : 1440
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.5
open length of G : 0.0167

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
193.73 0.654 4.33 -2.93 0.384 1.87 -0.874 -4.3 -0.619 14.2 22.88 1427 15.4 0.058
221.34 0.693 4.31 -1.76 0.368 1.82 -0.529 -- -0.591 14 21.68 1446 15.8 0.0829
195.99 0.652 4.33 -2.9 0.385 1.87 -- -4.03 -0.61 14.5 22.84 1440 15.5 0.0165
214.65 0.682 4.2 -1.89 0.281 1.87 -- -- -0.427 13.8 20.36 1441 15.9 0.138
204.7 0.666 4.33 -2.91 -- 1.82 -- -4.11 -0.604 -- 22.88 1440 15.5 0.0167
303.09 0.816 4.15 -1.25 0.307 -- -0.767 -- -0.173 14.3 -- -- -- --
305.23 0.818 4.15 -1.27 0.309 -- -- -- -0.178 14.6 -- -- -- --
221.08 0.693 4.17 -1.73 -- 1.91 -- -- -0.316 -- 22.38 1650 15.9 0.143
284.59 0.786 4.12 -- 0.318 1.85 -- -- -0.114 13.4 22.6 1577 16.6 0.0166
310.82 0.824 4.15 -1.28 -- -- -- -- -0.185 -- -- -- -- --
347.82 0.872 4.12 -- 0.334 -- -- -- -0.036 14.6 -- -- -- --
290.21 0.793 4.13 -- -- 1.76 -- -- -0.124 -- 22.2 1585 16.6 0.000141
354.34 0.879 4.12 -- -- -- -- -- -0.0429 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 203.29 temperature 25 1440 > th dose dependent rect. 15 1
4 204.34 temperature 20 1440 > th dose dependent rect. 13 5
102 211.94 temperature 20 1440 > th dose dependent sin 20 NA
144 213.08 temperature 25 1440 > th dose dependent rect. 13 19
319 216.17 wind 7 43200 < th dose independent rect. 11 23
325 216.24 wind 7 43200 > th dose independent rect. 11 23
327 216.26 wind 7 43200 > th dose independent rect. 13 23
328 216.26 wind 7 43200 < th dose independent rect. 13 23
381 216.66 wind 7 43200 < th dose independent rect. 9 23
384 216.68 wind 7 43200 < th dose independent rect. 18 23
385 216.69 wind 7 43200 < th dose independent rect. 3 23
386 216.70 wind 7 43200 < th dose independent no NA NA
390 216.71 wind 7 43200 > th dose independent rect. 18 23
394 216.73 wind 7 43200 > th dose independent no NA NA
395 216.73 wind 7 43200 > th dose independent rect. 9 23
401 216.75 wind 7 43200 > th dose independent rect. 2 23
423 216.79 wind 7 43200 < th dose independent rect. 23 23
435 216.84 wind 7 43200 > th dose independent rect. 23 23
583 217.36 wind 7 43200 > th dose dependent rect. 13 19
643 217.62 wind 7 43200 > th dose independent sin 15 NA
657 217.70 wind 7 43200 < th dose independent sin 16 NA
663 217.71 wind 5 43200 > th dose dependent rect. 11 19
781 218.15 wind 7 43200 > th dose dependent sin 15 NA
824 218.35 temperature 25 1440 > th dose dependent no NA NA
950 218.91 wind 5 43200 > th dose dependent rect. 4 21