BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0816500 Os03g0816500|AK099739
(513 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0816500 2OG-Fe(II) oxygenase domain containing protein 878 0.0
>Os03g0816500 2OG-Fe(II) oxygenase domain containing protein
Length = 513
Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/513 (85%), Positives = 440/513 (85%)
Query: 1 MDSSKQQLAVWPVSAAKKYAGFDGKAAARERSGLANASFRVYYSLRAGAVPFLWESSPGT 60
MDSSKQQLAVWPVSAAKKYAGFDGKAAARERSGLANASFRVYYSLRAGAVPFLWESSPGT
Sbjct: 1 MDSSKQQLAVWPVSAAKKYAGFDGKAAARERSGLANASFRVYYSLRAGAVPFLWESSPGT 60
Query: 61 PKXXXXXXXXXXXXXXXXXXLPPISPPPSYQSVEMKKGGRCRPRSSWPXXXXXGDIAPLK 120
PK LPPISPPPSYQSVEMKKGGRCRPRSSWP GDIAPLK
Sbjct: 61 PKAAAVSSPARESSSAARGALPPISPPPSYQSVEMKKGGRCRPRSSWPAAAAAGDIAPLK 120
Query: 121 GESVKPFPXXXXXXXXXXXXXXMVXXXXXXXXXVRTPANFPPRQKARLPRGPVHEKSLEQ 180
GESVKPFP MV VRTPANFPPRQKARLPRGPVHEKSLEQ
Sbjct: 121 GESVKPFPALVLASALTLAASSMVGGGGGGGHGVRTPANFPPRQKARLPRGPVHEKSLEQ 180
Query: 181 QXXXXXXXXXXXXXXXXXLQLAAAIVQPQKPLESPQHMVTPVRLQESPGPRTIPCXXXXX 240
Q LQLAAAIVQPQKPLESPQHMVTPVRLQESPGPRTIPC
Sbjct: 181 QKKGPSSSSPSVSSNKSPLQLAAAIVQPQKPLESPQHMVTPVRLQESPGPRTIPCSSGSV 240
Query: 241 XXXXXAAPFDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKK 300
AAPFDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKK
Sbjct: 241 GSGSGAAPFDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKK 300
Query: 301 FLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFD 360
FLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFD
Sbjct: 301 FLKHDDQVDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFD 360
Query: 361 GAQPPSIPEVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGL 420
GAQPPSIPEVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGL
Sbjct: 361 GAQPPSIPEVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGL 420
Query: 421 HQDKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIF 480
HQDKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIF
Sbjct: 421 HQDKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIF 480
Query: 481 HGVSRIKPKTAPNWLTDEAKLRPGRLNLTFRQH 513
HGVSRIKPKTAPNWLTDEAKLRPGRLNLTFRQH
Sbjct: 481 HGVSRIKPKTAPNWLTDEAKLRPGRLNLTFRQH 513
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,396,844
Number of extensions: 733718
Number of successful extensions: 1631
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1631
Number of HSP's successfully gapped: 2
Length of query: 513
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 408
Effective length of database: 11,553,331
Effective search space: 4713759048
Effective search space used: 4713759048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)