BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0816500 Os03g0816500|AK099739
(513 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G14160.1 | chr3:4693495-4695198 FORWARD LENGTH=456 300 1e-81
AT5G01780.2 | chr5:302365-304129 REVERSE LENGTH=443 263 2e-70
AT3G14140.1 | chr3:4688546-4690404 FORWARD LENGTH=474 259 3e-69
AT1G11780.1 | chr1:3977614-3979177 REVERSE LENGTH=346 52 6e-07
>AT3G14160.1 | chr3:4693495-4695198 FORWARD LENGTH=456
Length = 455
Score = 300 bits (768), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 144/265 (54%), Positives = 189/265 (71%), Gaps = 8/265 (3%)
Query: 249 FDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKKFLKHDDQV 308
FDI + +K I L +LL ++REK++ + S +RPGMVLLK +L +DQV
Sbjct: 199 FDIFL---EKKGIVLKPNLLVLSREKKKAAKGYSGTV-----IRPGMVLLKNYLSINDQV 250
Query: 309 DIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSIP 368
I+ +C++LG+G GGFY PGYRD KL L+MMCLGKNWDP + YG+TRPFDG+ P IP
Sbjct: 251 MIVNKCRRLGLGEGGFYQPGYRDEAKLHLKMMCLGKNWDPETSRYGETRPFDGSTAPRIP 310
Query: 369 EVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGLHQDKDETK 428
F++ V+ A++ S ++ +E+P + PDIC+VNFY+S+G+LGLHQDKDE++
Sbjct: 311 AEFNQFVEKAVKESQSLAASNSKQTKGGDEIPFMLPDICIVNFYSSTGRLGLHQDKDESE 370
Query: 429 PSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIFHGVSRIKP 488
S+ KGLPVVSFS+GD+AEFLYGD D DKA + LESGDVL+FGG+SR +FHGV I+
Sbjct: 371 NSIRKGLPVVSFSIGDSAEFLYGDQRDEDKAETLTLESGDVLLFGGRSRKVFHGVRSIRK 430
Query: 489 KTAPNWLTDEAKLRPGRLNLTFRQH 513
TAP L E LRPGRLNLTFRQ+
Sbjct: 431 DTAPKALLQETSLRPGRLNLTFRQY 455
>AT5G01780.2 | chr5:302365-304129 REVERSE LENGTH=443
Length = 442
Score = 263 bits (672), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 132/265 (49%), Positives = 183/265 (69%), Gaps = 7/265 (2%)
Query: 248 PFDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKKFLKHDDQ 307
PFDIC ++ + +L E RE ++S + + +RPGMVLLK FL D Q
Sbjct: 184 PFDICSSVLERNDTSIKDWILA--DETNRETVEVSNKH---KVIRPGMVLLKDFLTPDIQ 238
Query: 308 VDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSI 367
VDI++ C++LG+ GFY PGY G KL LQMMCLG+NWDP ++ Y D ++ P I
Sbjct: 239 VDIVKTCRELGVKPTGFYQPGYSVGSKLHLQMMCLGRNWDPQTK-YRKNTDID-SKAPEI 296
Query: 368 PEVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGLHQDKDET 427
P F+ +V+ AI+ ++ + +++ + LP +SPDIC+VNFY+ +G+LGLHQD+DE+
Sbjct: 297 PVTFNVLVEKAIREAHALIDRESGTEDAERILPVMSPDICIVNFYSETGRLGLHQDRDES 356
Query: 428 KPSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLESGDVLIFGGKSRLIFHGVSRIK 487
+ S+ +GLP+VSFS+GD+AEFLYG+ DV++A V LESGDVLIFGG+SR+IFHGV I
Sbjct: 357 EESIARGLPIVSFSIGDSAEFLYGEKRDVEEAQGVILESGDVLIFGGESRMIFHGVKSII 416
Query: 488 PKTAPNWLTDEAKLRPGRLNLTFRQ 512
P +AP L +E+KLR GRLNLTFR
Sbjct: 417 PNSAPMSLLNESKLRTGRLNLTFRH 441
>AT3G14140.1 | chr3:4688546-4690404 FORWARD LENGTH=474
Length = 473
Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 133/261 (50%), Positives = 173/261 (66%), Gaps = 29/261 (11%)
Query: 248 PFDICIKRDDKCSIKLSRSLLEINREKRREREQLSKEAAPLQYLRPGMVLLKKFLKHDDQ 307
PFDI +K K ++L S LE+NREK++ + S +RPGMVLLK +L ++Q
Sbjct: 203 PFDIFLK---KKVMRLKPSFLELNREKKKAAKGFSGIV-----IRPGMVLLKNYLSINNQ 254
Query: 308 VDIIRRCQKLGIGSGGFYTPGYRDGGKLSLQMMCLGKNWDPNSRSYGDTRPFDGAQPPSI 367
V I+ +C++LG+G GGFY PG++DGG L L+MMCLGKNWD +R YG+ RP DG+ PP I
Sbjct: 255 VMIVNKCRQLGLGEGGFYQPGFQDGGLLHLKMMCLGKNWDCQTRRYGEIRPIDGSVPPRI 314
Query: 368 PEVFSKIVKDAIQASNEFLRQKARPANDVEELPPLSPDICLVNFYTSSGKLGLHQ----- 422
P FS++V+ AI+ S + + +E+P L PDIC+VNFYTS+GKLGLHQ
Sbjct: 315 PVEFSQLVEKAIKESKSLVATNSNETKGGDEIPLLLPDICVVNFYTSTGKLGLHQVSVYD 374
Query: 423 ----------------DKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDVDKASKVDLES 466
DK E+K SL KGLP+VSFS+GD+AEFLYGD DVDKA + LES
Sbjct: 375 KTSFDFLKYKGGYLNTDKGESKKSLRKGLPIVSFSIGDSAEFLYGDQKDVDKADTLILES 434
Query: 467 GDVLIFGGKSRLIFHGVSRIK 487
GDVLIFG +SR +FHGV I+
Sbjct: 435 GDVLIFGERSRNVFHGVRSIR 455
>AT1G11780.1 | chr1:3977614-3979177 REVERSE LENGTH=346
Length = 345
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 68/150 (45%), Gaps = 22/150 (14%)
Query: 337 LQMMCLGKNWDPNSRSYGDTRPFDGAQPPSIPEVFSKIVKDAIQASNEFLRQKARPANDV 396
L+ LG +D + R+Y + P + +IP+ ++ K A D
Sbjct: 177 LRWSTLGLQFDWSKRNYDVSLPHN-----NIPDALCQLAK----------THAAIAMPDG 221
Query: 397 EELPPLSPDICLVNFYTSSGKLGLHQDKDETKPSLHKGLPVVSFSLGDTAEFLYGDVNDV 456
EE P+ +VN++ LG H D E S P+VS SLG A FL G +
Sbjct: 222 EEF---RPEGAIVNYFGIGDTLGGHLDDMEADWSK----PIVSMSLGCKAIFLLGGKSKD 274
Query: 457 DKASKVDLESGDVLIFGGKSRLIFHGVSRI 486
D + L SGDV++ G++R FHG+ RI
Sbjct: 275 DPPHAMYLRSGDVVLMAGEARECFHGIPRI 304
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,434,650
Number of extensions: 427119
Number of successful extensions: 1038
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1035
Number of HSP's successfully gapped: 6
Length of query: 513
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 410
Effective length of database: 8,282,721
Effective search space: 3395915610
Effective search space used: 3395915610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 114 (48.5 bits)