Os03g0809300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os03g0809300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.85 | 0.281 | 10.4 | 0.511 | 0.35 | 1.96 | 0.356 | -0.75 | 0.0908 | 8.63 | 29.03 | 78 | -- | -- |
| 36.56 | 0.282 | 10.4 | 0.4 | 0.353 | 1.99 | 0.469 | -- | 0.0745 | 8.77 | 28.78 | 80 | -- | -- |
| 36.22 | 0.28 | 10.4 | 0.539 | 0.358 | 1.96 | -- | -0.871 | 0.0919 | 8.7 | 29.16 | 70 | -- | -- |
| 37.22 | 0.284 | 10.4 | 0.399 | 0.348 | 1.97 | -- | -- | 0.0631 | 8.66 | 28.79 | 79 | -- | -- |
| 41.35 | 0.299 | 10.4 | 0.567 | -- | 2.01 | -- | -0.996 | 0.081 | -- | 30.22 | 159 | -- | -- |
| 89.99 | 0.445 | 10.5 | -0.0938 | 0.725 | -- | 0.189 | -- | -0.347 | 4.7 | -- | -- | -- | -- |
| 90.09 | 0.444 | 10.5 | -0.0948 | 0.726 | -- | -- | -- | -0.348 | 4.67 | -- | -- | -- | -- |
| 42.17 | 0.302 | 10.4 | 0.418 | -- | 2 | -- | -- | 0.0707 | -- | 28.78 | 173 | -- | -- |
| 40.89 | 0.298 | 10.4 | -- | 0.367 | 1.8 | -- | -- | -0.0122 | 8.06 | 28.85 | 69 | -- | -- |
| 118.07 | 0.508 | 10.5 | -0.0672 | -- | -- | -- | -- | -0.329 | -- | -- | -- | -- | -- |
| 90.32 | 0.445 | 10.5 | -- | 0.724 | -- | -- | -- | -0.338 | 4.67 | -- | -- | -- | -- |
| 46.32 | 0.317 | 10.4 | -- | -- | 1.86 | -- | -- | -0.00676 | -- | 29.18 | 157 | -- | -- |
| 118.19 | 0.507 | 10.5 | -- | -- | -- | -- | -- | -0.322 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 3 | 36.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 36.15 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 7 | 36.28 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 8 | 36.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 36.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 13 | 36.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 19 | 37.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 21 | 37.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 24 | 37.17 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 35 | 37.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 38 | 37.86 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 41 | 38.21 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 50 | 38.77 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 67 | 39.43 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 76 | 39.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 88 | 40.15 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 148 | 42.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 18 |
| 188 | 43.78 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 261 | 44.60 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 463 | 46.26 | temperature | 15 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 477 | 46.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 633 | 47.20 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 657 | 47.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 718 | 47.67 | temperature | 20 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 726 | 47.70 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 729 | 47.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 754 | 47.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 23 |
| 799 | 47.90 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 815 | 47.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 829 | 47.97 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 7 |
| 857 | 48.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 2 |
| 874 | 48.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 883 | 48.09 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 952 | 48.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 974 | 48.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 23 |